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    TXLNGY taxilin gamma Y-linked (pseudogene) [ Homo sapiens (human) ]

    Gene ID: 246126, updated on 2-Nov-2024

    Summary

    Official Symbol
    TXLNGYprovided by HGNC
    Official Full Name
    taxilin gamma Y-linked (pseudogene)provided by HGNC
    Primary source
    HGNC:HGNC:18473
    See related
    Ensembl:ENSG00000291033 MIM:400031; AllianceGenome:HGNC:18473
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TXLNG2P; CYorf15A; CYorf15B
    Summary
    Predicted to enable syntaxin binding activity. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in prostate (RPKM 7.9), small intestine (RPKM 4.8) and 18 other tissues See more
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    Genomic context

    See TXLNGY in Genome Data Viewer
    Location:
    Yq11.222-q11.223
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (19567358..19607170)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (20473918..20513732)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (21729244..21769056)

    Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene BCL6 corepressor pseudogene 1 Neighboring gene BCL-6 corepressor-like Neighboring gene uncharacterized LOC105377223 Neighboring gene lysine demethylase 5D Neighboring gene uncharacterized LOC105377224

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Other Names

    • lipopolysaccaride-specific response 5-like protein
    • taxilin gamma 2, pseudogene
    • taxilin gamma pseudogene, Y-linked

    Clone Names

    • FLJ33216, MGC21662, MGC131732, DKFZp451G0616

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables syntaxin binding IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045128.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and spans the full extent of this pseudogene. There are no full-length transcripts representing this exon combination; it is predicted based on partial transcript alignments and on full-length alignments from the functional gene, GeneID:55787.
      Source sequence(s)
      AC009977, AC010889, AI828041, BM263181, CD242693, FY211499
    2. NR_045129.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks several 3' exons but contains an alternate 3' exon, compared to variant 1.
      Source sequence(s)
      AI129169, BM263181
      Related
      ENST00000447520.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

      Range
      19567358..19607170
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060948.1 Alternate T2T-CHM13v2.0

      Range
      20473918..20513732
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001005852.2: Suppressed sequence

      Description
      NM_001005852.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.