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    4930444F02Rik RIKEN cDNA 4930444F02 gene [ Mus musculus (house mouse) ]

    Gene ID: 73968, updated on 17-Aug-2024

    Summary

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    Official Symbol
    4930444F02Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4930444F02 geneprovided by MGI
    Primary source
    MGI:MGI:1921218
    See related
    AllianceGenome:MGI:1921218
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    mpiR; 1700010L24Rik
    Expression
    Restricted expression toward testis adult (RPKM 9.8) See more
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    Genomic context

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    See 4930444F02Rik in Genome Data Viewer
    Location:
    10 A3; 10 7.95 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (18673047..18707678, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (18797299..18831930, complement)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene ARFGEF family member 3 Neighboring gene STARR-seq mESC enhancer starr_25915 Neighboring gene STARR-seq mESC enhancer starr_25916 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:18384699-18384900 Neighboring gene predicted gene, 32926 Neighboring gene STARR-seq mESC enhancer starr_25918 Neighboring gene predicted gene 4922 Neighboring gene STARR-seq mESC enhancer starr_25919 Neighboring gene PERP, TP53 apoptosis effector Neighboring gene STARR-positive B cell enhancer mm9_chr10:18636945-18637246 Neighboring gene STARR-positive B cell enhancer ABC_E2316 Neighboring gene tumor necrosis factor, alpha-induced protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Organization and transcriptional output of a novel mRNA-like piRNA gene (mpiR) located on mouse chromosome 10. Kim M, et al. RNA, 2008 Jun. PMID 18441047, Free PMC Article
    2. Characterization of the piRNA complex from rat testes. Lau NC, et al. Science, 2006 Jul 21. PMID 16778019
    3. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
    4. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
    5. A germline-specific class of small RNAs binds mammalian Piwi proteins. Girard A, et al. Nature, 2006 Jul 13. PMID 16751776

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. This work provides a picture of a novel, lineage-specific, noncoding RNA gene and describes its processing into both mRNA-like and piRNA products.(mpiR)
      Title: Organization and transcriptional output of a novel mRNA-like piRNA gene (mpiR) located on mouse chromosome 10.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038034.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC158630

    2. NR_038035.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has a different 3' end, compared to variant 1.
      Source sequence(s)
      AC158630

    3. NR_102728.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) includes an additional exon and differs in the 3' end compared to variant 1.
      Source sequence(s)
      AK029596, EU523867

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      18673047..18707678 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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