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    LOC4339004 laccase-12-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339004, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339004
    Gene description
    laccase-12-like
    Locus tag
    OSNPB_050458600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LAC13; Laccase-13; OJ1362_D02.10
    Expression
    Biased expression in flower buds (RPKM 9.7), flowers (RPKM 1.6) and 1 other tissue See more
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    Genomic context

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    See LOC4339004 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (22646927..22649519)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (22533514..22536103)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like Neighboring gene laccase-12 Neighboring gene transcription factor MYB3R-2-like Neighboring gene uncharacterized LOC4339006

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hydroquinone:oxygen oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lignin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    laccase-12-like
    Names
    Benzenediol:oxygen oxidoreductase 13
    Diphenol oxidase 13
    LOC_Os05g38420
    Urishiol oxidase 13
    laccase-12/13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      22646927..22649519
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782682.3 → XP_015638168.1  laccase-12-like

      UniProtKB/Swiss-Prot
      A0A0P0WND9, B9FJH4, P0DKK6, Q0DHL2, Q0DHL3, Q65XF7
      Conserved Domains (1) summary
      TIGR03389
      Location:27 → 563
      laccase; plant
    Nucleotide Protein
    Heading Accession and Version

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