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    D930019O06Rik RIKEN cDNA D930019O06 [ Mus musculus (house mouse) ]

    Gene ID: 425051, updated on 6-Oct-2024

    Summary

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    Official Symbol
    D930019O06Rikprovided by MGI
    Official Full Name
    RIKEN cDNA D930019O06provided by MGI
    Primary source
    MGI:MGI:3043219
    See related
    AllianceGenome:MGI:3043219
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in genital fat pad adult (RPKM 4.0), cortex adult (RPKM 1.4) and 5 other tissues See more
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    Genomic context

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    See D930019O06Rik in Genome Data Viewer
    Location:
    1 B; 1 18.4 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (39690636..39697579)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (39651468..39658419)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 51620 Neighboring gene predicted gene 5100 Neighboring gene cellular repressor of E1A-stimulated genes 2 Neighboring gene STARR-seq mESC enhancer starr_00725 Neighboring gene STARR-seq mESC enhancer starr_00727 Neighboring gene regulatory factor X 8 Neighboring gene STARR-positive B cell enhancer ABC_E9462 Neighboring gene STARR-seq mESC enhancer starr_00729 Neighboring gene predicted gene 3646

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. USP7 represses lineage differentiation genes in mouse embryonic stem cells by both catalytic and noncatalytic activities. Liu C, et al. Sci Adv, 2023 May 19. PMID 37196079, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      39690636..39697579
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001778897.2 RNA Sequence

    2. XR_004936031.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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