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    pde6h.L phosphodiesterase 6H L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 444661, updated on 18-Sep-2024

    Summary

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    Official Symbol
    pde6h.L
    Official Full Name
    phosphodiesterase 6H L homeolog
    Primary source
    Xenbase:XB-GENE-17342282
    Locus tag
    XELAEV_18023881mg
    See related
    EnsemblRapid:ENSXLAG00005028799
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    rcd3; pde6h; pde6ha
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    Genomic context

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    See pde6h.L in Genome Data Viewer
    Location:
    chromosome: 4L
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (127619171..127633686)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (122377442..122391941)

    Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene endoplasmic reticulum protein 27 L homeolog Neighboring gene Rho GDP dissociation inhibitor (GDI) beta L homeolog Neighboring gene vomeronasal type-2 receptor 26 Neighboring gene transfer RNA arginine (anticodon CCG)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables 3',5'-cyclic-nucleotide phosphodiesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables cGMP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables calmodulin-activated 3',5'-cyclic-GMP phosphodiesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables calmodulin-activated dual specificity 3',5'-cyclic-GMP, 3',5'-cyclic-AMP phosphodiesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within positive regulation of epidermal growth factor receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within visual perception IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in photoreceptor outer segment membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    phosphodiesterase 6H L homeolog
    Names
    phosphodiesterase 6H, cGMP-specific, cone, gamma, a
    NP_001086232.1
    XP_041445215.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001092763.1 → NP_001086232.1  phosphodiesterase 6H L homeolog

      See identical proteins and their annotated locations for NP_001086232.1

      Status: PROVISIONAL

      Source sequence(s)
      BC074358
      UniProtKB/TrEMBL
      A0A974D5A5, Q6GLU4
      Related
      ENSXLAP00005085812.1, ENSXLAT00005087473.1
      Conserved Domains (1) summary
      pfam04868
      Location:6 → 87
      PDE6_gamma; Retinal cGMP phosphodiesterase, gamma subunit

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      127619171..127633686
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041589281.1 → XP_041445215.1  phosphodiesterase 6H L homeolog isoform X1

      UniProtKB/TrEMBL
      A0A974D5A5, Q6GLU4
      Conserved Domains (1) summary
      pfam04868
      Location:6 → 87
      PDE6_gamma; Retinal cGMP phosphodiesterase, gamma subunit
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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