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    kctd18.L potassium channel tetramerization domain containing 18 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 496008, updated on 15-Oct-2023

    Summary

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    Official Symbol
    kctd18.L
    Official Full Name
    potassium channel tetramerization domain containing 18 L homeolog
    Primary source
    Xenbase:XB-GENE-5963027
    Locus tag
    XELAEV_18045086mg
    See related
    EnsemblRapid:ENSXLAG00005024248
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    kctd18
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    Genomic context

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    See kctd18.L in Genome Data Viewer
    Location:
    chromosome: 9_10L
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (96099191..96106935, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (85521426..85529506, complement)

    Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene hemoglobin subunit beta-2-like Neighboring gene hemoglobin subunit gamma 2 L homeolog Neighboring gene RNA-binding protein 44 Neighboring gene rhomboid 5 homolog 1 L homeolog Neighboring gene N-methylpurine DNA glycosylase L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within monoatomic ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein homooligomerization IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    potassium channel tetramerization domain containing 18 L homeolog
    Names
    potassium channel tetramerisation domain containing 18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001095275.1 → NP_001088744.1  potassium channel tetramerization domain containing 18 L homeolog

      See identical proteins and their annotated locations for NP_001088744.1

      Status: PROVISIONAL

      Source sequence(s)
      BC087399
      UniProtKB/TrEMBL
      Q5PQ21
      Related
      ENSXLAP00005071803.1, ENSXLAT00005073350.1
      Conserved Domains (2) summary
      smart00225
      Location:12 → 98
      BTB; Broad-Complex, Tramtrack and Bric a brac
      cl02518
      Location:14 → 98
      BTB; BTB/POZ domain

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      96099191..96106935 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018234555.2 → XP_018090044.1  potassium channel tetramerization domain containing 18 L homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J0TTI5
      Related
      ENSXLAP00005071864.1, ENSXLAT00005073411.1

    2. XM_018234557.2 → XP_018090046.1  potassium channel tetramerization domain containing 18 L homeolog isoform X3

      UniProtKB/TrEMBL
      A0A1L8EXC6, A0A974BZR9
      Conserved Domains (1) summary
      cd18372
      Location:13 → 113
      BTB_POZ_KCTD18; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium channel tetramerization domain-containing protein 18 (KCTD18)

    3. XM_018234556.2 → XP_018090045.1  potassium channel tetramerization domain containing 18 L homeolog isoform X3

      UniProtKB/TrEMBL
      A0A1L8EXC6, A0A974BZR9
      Conserved Domains (1) summary
      cd18372
      Location:13 → 113
      BTB_POZ_KCTD18; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium channel tetramerization domain-containing protein 18 (KCTD18)

    4. XM_041575723.1 → XP_041431657.1  potassium channel tetramerization domain containing 18 L homeolog isoform X3

      UniProtKB/TrEMBL
      A0A1L8EXC6, A0A974BZR9
      Related
      ENSXLAP00005071837.1, ENSXLAT00005073384.1
      Conserved Domains (1) summary
      cd18372
      Location:13 → 113
      BTB_POZ_KCTD18; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium channel tetramerization domain-containing protein 18 (KCTD18)

    5. XM_041575722.1 → XP_041431656.1  potassium channel tetramerization domain containing 18 L homeolog isoform X2

      UniProtKB/TrEMBL
      A0A8J1LRE8
      Conserved Domains (1) summary
      cd18372
      Location:49 → 149
      BTB_POZ_KCTD18; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium channel tetramerization domain-containing protein 18 (KCTD18)
    Nucleotide Protein Strain
    Heading Accession and Version

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