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    gatad1.L GATA zinc finger domain containing 1 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 380295, updated on 18-Sep-2024

    Summary

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    Official Symbol
    gatad1.L
    Official Full Name
    GATA zinc finger domain containing 1 L homeolog
    Primary source
    Xenbase:XB-GENE-6253912
    Locus tag
    XELAEV_18030860mg
    See related
    EnsemblRapid:ENSXLAG00005034136
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    odag; gatad1
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    Genomic context

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    See gatad1.L in Genome Data Viewer
    Location:
    chromosome: 6L
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (31730815..31740524, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (29247765..29257595, complement)

    Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene peroxisomal biogenesis factor 1 L homeolog Neighboring gene protein lifeguard 1 Neighboring gene cyclin-dependent kinase 6-like Neighboring gene sterile alpha motif domain-containing protein 9-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC52625

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    GATA zinc finger domain-containing protein 1
    Names
    ocular development associated

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001087134.1 → NP_001080603.1  GATA zinc finger domain-containing protein 1

      See identical proteins and their annotated locations for NP_001080603.1

      Status: PROVISIONAL

      Source sequence(s)
      BC044066
      UniProtKB/Swiss-Prot
      Q7ZXY4
      Related
      ENSXLAP00005101914.1, ENSXLAT00005103903.1
      Conserved Domains (1) summary
      cl00158
      Location:9 → 33
      ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      31730815..31740524 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018266279.2 → XP_018121768.1  GATA zinc finger domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A1L8FVS0, A0A974HFI1

    2. XM_018266281.2 → XP_018121770.1  GATA zinc finger domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A1L8FVS0, A0A974HFI1

    3. XM_018266282.2 → XP_018121771.1  GATA zinc finger domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A1L8FVS0, A0A974HFI1

    4. XM_041565284.1 → XP_041421218.1  GATA zinc finger domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A1L8FVS0, A0A974HFI1

    5. XM_018266280.2 → XP_018121769.1  GATA zinc finger domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A1L8FVS0, A0A974HFI1
      Related
      ENSXLAP00005101933.1, ENSXLAT00005103925.1
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7ZXY4.1 GenPept UniProtKB/Swiss-Prot:Q7ZXY4

    Gene LinkOut

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