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    eloc.L elongin C L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 379820, updated on 17-Aug-2024

    Summary

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    Official Symbol
    eloc.L
    Official Full Name
    elongin C L homeolog
    Primary source
    Xenbase:XB-GENE-6254689
    See related
    EnsemblRapid:ENSXLAG00005011004
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    tceb1; tceb1.L
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    Genomic context

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    See eloc.L in Genome Data Viewer
    Location:
    chromosome: 6L
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (110882970..110890070, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016764618.1 (1..291, complement)

    Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121394876 Neighboring gene cAMP-dependent protein kinase catalytic subunit gamma-like Neighboring gene NADH:ubiquinone oxidoreductase core subunit V2 L homeolog Neighboring gene ankyrin repeat domain 12 L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. XRab40 and XCullin5 form a ubiquitin ligase complex essential for the noncanonical Wnt pathway. Lee RH, et al. EMBO J, 2007 Aug 8. PMID 17627283, Free PMC Article
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Clone Names

    • MGC64412

    General protein information

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    Preferred Names
    elongin C L homeolog
    Names
    elongation factor SIII p15 subunit
    transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) L homeolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001086659.2 → NP_001080128.1  elongin C L homeolog

      See identical proteins and their annotated locations for NP_001080128.1

      Status: VALIDATED

      Source sequence(s)
      JAGEVR010000049
      UniProtKB/TrEMBL
      A0A974BQ33, A0A974CM81, Q6PHW7
      Related
      ENSXLAP00005032377.1, ENSXLAT00005033163.1
      Conserved Domains (1) summary
      cd18321
      Location:18 → 112
      BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      110882970..110890070 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041565273.1 → XP_041421207.1  elongin C L homeolog isoform X1

      UniProtKB/TrEMBL
      A0A974BQ33, A0A974CM81, Q6PHW7
      Conserved Domains (1) summary
      cd18321
      Location:18 → 112
      BTB_POZ_EloC; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Elongin-C (EloC) and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Research Materials