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    llph.S LLPH S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 379208, updated on 18-Sep-2024

    Summary

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    Official Symbol
    llph.S
    Official Full Name
    LLPH S homeolog
    Primary source
    Xenbase:XB-GENE-1188271
    Locus tag
    XELAEV_18021202mg
    See related
    EnsemblRapid:ENSXLAG00005021492
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    llph; llphp3; XB959006; llphp3.S; XB959006.L; XB959006.S; LOC646644.S
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    Genomic context

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    See llph.S in Genome Data Viewer
    Location:
    chromosome: 3S
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (90398079..90403708, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (88564488..88570117, complement)

    Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene LEM domain containing 3 S homeolog Neighboring gene high mobility group AT-hook 2 S homeolog Neighboring gene uncharacterized LOC108713161 Neighboring gene exportin, tRNA S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC53320

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables basal RNA polymerase II transcription machinery binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables basal RNA polymerase II transcription machinery binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within dendrite extension IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within dendrite extension ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within positive regulation of dendritic spine development ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in chromosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleolus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein LLP homolog
    Names
    LLP homolog, long-term synaptic facilitation (Aplysia) pseudogene S homeolog
    LLP homolog, long-term synaptic facilitation factor pseudogene S homeolog
    LLPH pseudogene 3 S homeolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001086052.1 → NP_001079521.1  protein LLP homolog

      See identical proteins and their annotated locations for NP_001079521.1

      Status: PROVISIONAL

      Source sequence(s)
      BC043994
      UniProtKB/Swiss-Prot
      Q7ZY35
      UniProtKB/TrEMBL
      A0A974D930
      Related
      ENSXLAP00005063114.1, ENSXLAT00005064567.1
      Conserved Domains (1) summary
      pfam10169
      Location:3 → 109
      Laps; Learning-associated protein

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      90398079..90403708 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7ZY35.1 GenPept UniProtKB/Swiss-Prot:Q7ZY35

    Gene LinkOut

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