kirrel2.L kirre like nephrin family adhesion molecule 2 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: kirrel2.L
Official Full Name: kirre like nephrin family adhesion molecule 2 L homeolog
Primary source: Xenbase:XB-GENE-866535
Locus tag: XELAEV_18036474mg
See related: EnsemblRapid:ENSXLAG00005015240
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: NEPH1; kirrel2
Annotation information: Annotation category: partial on reference assembly
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Genomic context

Location:: chromosome: 7L

Exon count:: 15

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	7L	NC_054383.1 (135005099..135022882)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	7L	NC_030736.1 (122421014..122438769, complement)

Chromosome 7L - NC_054383.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables cell adhesion molecule binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within cell-cell adhesion	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cell-cell junction	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: kirre like nephrin family adhesion molecule 2 L homeolog

Names: kin of IRRE like 2 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001086488.1 → NP_001079957.1 kirre like nephrin family adhesion molecule 2 L homeolog precursor

See identical proteins and their annotated locations for NP_001079957.1

Status: PROVISIONAL

Source sequence(s)

BC057728

UniProtKB/TrEMBL

A0A974CIF6, A0A974HAS6, Q6PF50

Related

ENSXLAP00005044687.1, ENSXLAT00005045785.1

Conserved Domains (7) summary

cd05758
Location:391 → 488

Ig5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

cd05759
Location:139 → 220

Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

smart00408
Location:321 → 373

IGc2; Immunoglobulin C-2 Type

smart00410
Location:28 → 117

IG_like; Immunoglobulin like

pfam07679
Location:308 → 389

I-set; Immunoglobulin I-set domain

pfam12067
Location:621 → 697

Sox_C_TAD; Sox C-terminal transactivation domain

pfam13895
Location:228 → 304

Ig_2; Immunoglobulin domain