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    psmc4.L proteasome 26S subunit, ATPase 4 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 398853, updated on 18-Sep-2024

    Summary

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    Official Symbol
    psmc4.L
    Official Full Name
    proteasome 26S subunit, ATPase 4 L homeolog
    Primary source
    Xenbase:XB-GENE-5855587
    See related
    EnsemblRapid:ENSXLAG00005014066
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    psmc4
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    Genomic context

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    See psmc4.L in Genome Data Viewer
    Location:
    chromosome: 7L
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7L NC_054383.1 (132774816..132789088)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7L NC_030736.1 (124525485..124539788, complement)

    Chromosome 7L - NC_054383.1Genomic Context describing neighboring genes Neighboring gene phospholipase A2 inhibitor and Ly6/PLAUR domain-containing protein-like Neighboring gene fish-egg lectin Neighboring gene fish-egg lectin-like Neighboring gene protein spinster homolog 1-like Neighboring gene elastase 2A L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The termination of UHRF1-dependent PAF15 ubiquitin signaling is regulated by USP7 and ATAD5. Miyashita R, et al. Elife, 2023 Feb 3. PMID 36734974, Free PMC Article
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Clone Names

    • MGC68784

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables proteasome-activating activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of proteasome complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of proteasome regulatory particle, base subcomplex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    proteasome 26S ATPase subunit 4 isoform 1
    Names
    proteasome (prosome, macropain) 26S subunit, ATPase, 4
    proteasome 26S ATPase subunit 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001089831.1 → NP_001083300.1  proteasome 26S ATPase subunit 4 isoform 1

      See identical proteins and their annotated locations for NP_001083300.1

      Status: PROVISIONAL

      Source sequence(s)
      BC060362
      UniProtKB/TrEMBL
      Q6PAD3
      Related
      ENSXLAP00005041524.1, ENSXLAT00005042467.1
      Conserved Domains (2) summary
      PTZ00454
      Location:36 → 420
      PTZ00454; 26S protease regulatory subunit 6B-like protein; Provisional
      pfam00004
      Location:204 → 337
      AAA; ATPase family associated with various cellular activities (AAA)

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054383.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      132774816..132789088
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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