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    hnrnpa2b1.L heterogeneous nuclear ribonucleoprotein A2/B1 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 379158, updated on 18-Sep-2024

    Summary

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    Official Symbol
    hnrnpa2b1.L
    Official Full Name
    heterogeneous nuclear ribonucleoprotein A2/B1 L homeolog
    Primary source
    Xenbase:XB-GENE-17340471
    Locus tag
    XELAEV_18030977mg
    See related
    EnsemblRapid:ENSXLAG00005013136
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    rnpa2; hnrpa2; hnrpb1; snrpb1; hnrnpa2; hnrnpb1; hnrpa2b1
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    Genomic context

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    See hnrnpa2b1.L in Genome Data Viewer
    Location:
    chromosome: 6L
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (42796747..42805735, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (38998087..39007099, complement)

    Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108718887 Neighboring gene NFE2 like bZIP transcription factor 3 L homeolog Neighboring gene chromobox 3 L homeolog Neighboring gene sorting nexin 10 L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Three new members of the RNP protein family in Xenopus. Good PJ, et al. Nucleic Acids Res, 1993 Feb 25. PMID 8451200, Free PMC Article
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC52881, MGC132139

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA 3'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in organelle IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    heterogeneous nuclear ribonucleoprotein A2 homolog 2
    Names
    hnRNP A2(B)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001086002.1 → NP_001079471.1  heterogeneous nuclear ribonucleoprotein A2 homolog 2

      See identical proteins and their annotated locations for NP_001079471.1

      Status: PROVISIONAL

      Source sequence(s)
      BC043750
      UniProtKB/Swiss-Prot
      P51990, Q5D0C2
      UniProtKB/TrEMBL
      A0A974CLW8, A0A974CM87
      Conserved Domains (3) summary
      cd12762
      Location:7 → 87
      RRM1_hnRNPA2B1; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein A2/B1 (hnRNP A2/B1) and similar proteins
      pfam11627
      Location:303 → 328
      HnRNPA1; Nuclear factor hnRNPA1
      cl17169
      Location:100 → 179
      RRM_SF; RNA recognition motif (RRM) superfamily

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      42796747..42805735 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018266206.2 → XP_018121695.1  heterogeneous nuclear ribonucleoprotein A2 homolog 2 isoform X1

      UniProtKB/TrEMBL
      A0A974CLV1, A0A974CM87, Q3KPP1
      Related
      ENSXLAP00005038759.1, ENSXLAT00005039680.1

    2. XM_041565248.1 → XP_041421182.1  heterogeneous nuclear ribonucleoprotein A2 homolog 2 isoform X2

      UniProtKB/TrEMBL
      A0A8J1KV43
      Related
      ENSXLAP00005038765.1, ENSXLAT00005039686.1
      Conserved Domains (2) summary
      TIGR01622
      Location:1 → 110
      SF-CC1; splicing factor, CC1-like family
      cl17169
      Location:61 → 135
      RRM_SF; RNA recognition motif (RRM) superfamily

    RNA

    1. XR_001936027.2 RNA Sequence

    2. XR_005961716.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P51990.1 GenPept UniProtKB/Swiss-Prot:P51990

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials