tyms.L thymidylate synthetase L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: tyms.L
Official Full Name: thymidylate synthetase L homeolog
Primary source: Xenbase:XB-GENE-1001390
Locus tag: XELAEV_18031891mg
See related: EnsemblRapid:ENSXLAG00005025572
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: ts; tyms
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 6L

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	6L	NC_054381.1 (115036707..115053264, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	6L	NC_030734.1 (107953894..107970237, complement)

Chromosome 6L - NC_054381.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables methyltransferase activity	IEA Inferred from Electronic Annotation more info
enables thymidylate synthase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within dTMP biosynthetic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within dTTP biosynthetic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within methylation	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within nucleotide biosynthetic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytosol	IEA Inferred from Electronic Annotation more info
located_in mitochondrion	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: thymidylate synthase

NP_001096659.1

EC 2.1.1.45

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001103189.1 → NP_001096659.1 thymidylate synthase

See identical proteins and their annotated locations for NP_001096659.1

Status: PROVISIONAL

Source sequence(s)

BC129727

UniProtKB/TrEMBL

A0A974CNF8, A1L2V6

Related

ENSXLAP00005076101.1, ENSXLAT00005077681.1

Conserved Domains (1) summary

pfam00303
Location:28 → 309

Thymidylat_synt; Thymidylate synthase

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

115036707..115053264 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)