fubp1.S far upstream element binding protein 1 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: fubp1.S
Official Full Name: far upstream element binding protein 1 S homeolog
Primary source: Xenbase:XB-GENE-6252996
Locus tag: XELAEV_18025067mg
See related: EnsemblRapid:ENSXLAG00005013646
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: fbp; FUSE; fbp1; fubp; fubp1; fubp1-a; fubp1-b
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Genomic context

Location:: chromosome: 4S

Exon count:: 23

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	4S	NC_054378.1 (61032308..61052647)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	4S	NC_030731.1 (54847307..54866073)

Chromosome 4S - NC_054378.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables mRNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of gene expression	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: far upstream element binding protein 1 S homeolog

Names: far upstream element (FUSE) binding protein 1 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001087172.1 → NP_001080641.1 far upstream element binding protein 1 S homeolog

See identical proteins and their annotated locations for NP_001080641.1

Status: PROVISIONAL

Source sequence(s)

BC044277

UniProtKB/TrEMBL

A0A974HLS6, Q7ZXS1, Q8AX84

Related

ENSXLAP00005040280.1, ENSXLAT00005041203.1

Conserved Domains (3) summary

cd00105
Location:90 → 152

KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

TIGR03665
Location:177 → 338

arCOG04150; arCOG04150 universal archaeal KH domain protein

pfam09005
Location:613 → 631

DUF1897; Domain of unknown function (DUF1897)