U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    smarcb1.S SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 443934, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    smarcb1.S
    Official Full Name
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 S homeolog
    Primary source
    Xenbase:XB-GENE-866272
    Locus tag
    XELAEV_18010510mg
    See related
    EnsemblRapid:ENSXLAG00005011953
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    smarcb1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See smarcb1.S in Genome Data Viewer
    Location:
    chromosome: 1S
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (142147326..142159734, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (126389023..126401460, complement)

    Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene D-dopachrome tautomerase S homeolog Neighboring gene solute carrier family 2, facilitated glucose transporter member 11 gene 3 S homeolog Neighboring gene matrix metallopeptidase 11 S homeolog Neighboring gene chromosome 1 C22orf15 homolog S homeolog

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation. Nishiyama A, et al. Nat Commun, 2020 Mar 6. PMID 32144273, Free PMC Article
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC80271

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within positive regulation of pseudohyphal growth by positive regulation of transcription from RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of brahma complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of nBAF complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of npBAF complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nuclear chromosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001092039.1 → NP_001085508.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

      See identical proteins and their annotated locations for NP_001085508.1

      Status: PROVISIONAL

      Source sequence(s)
      BC072865
      UniProtKB/Swiss-Prot
      Q6GQ82
      UniProtKB/TrEMBL
      A0A974DVH1
      Related
      ENSXLAP00005035053.1, ENSXLAT00005035938.1
      Conserved Domains (1) summary
      pfam04855
      Location:174 → 356
      SNF5; SNF5 / SMARCB1 / INI1

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      142147326..142159734 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6GQ82.1 GenPept UniProtKB/Swiss-Prot:Q6GQ82

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.