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    amd1.L adenosylmethionine decarboxylase 1 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 380052, updated on 18-Sep-2024

    Summary

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    Official Symbol
    amd1.L
    Official Full Name
    adenosylmethionine decarboxylase 1 L homeolog
    Primary source
    Xenbase:XB-GENE-484615
    Locus tag
    XELAEV_18027185mg
    See related
    EnsemblRapid:ENSXLAG00005030872
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    amd1
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    Genomic context

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    See amd1.L in Genome Data Viewer
    Location:
    chromosome: 5L
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (80532443..80552612, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (78319412..78339591, complement)

    Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121393712 Neighboring gene ribosome production factor 2 homolog L homeolog Neighboring gene cyclin-dependent kinase 19 L homeolog Neighboring gene solute carrier family 22 member 16 L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Maternal and zygotic expression of mRNA for S-adenosylmethionine decarboxylase and its relevance to the unique polyamine composition in Xenopus oocytes and embryos. Shinga J, et al. Biochim Biophys Acta, 1996 Jul 31. PMID 8765748
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC53431

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables adenosylmethionine decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables carboxy-lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within spermidine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within spermine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    S-adenosylmethionine decarboxylase proenzyme
    Names
    S-Adenosylmethionine decarboxylase 1A
    SAMDC
    adenosylmethionine decarboxylase 1A
    adoMetDC
    NP_001080360.1
    XP_041418017.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001086891.1 → NP_001080360.1  S-adenosylmethionine decarboxylase proenzyme

      See identical proteins and their annotated locations for NP_001080360.1

      Status: PROVISIONAL

      Source sequence(s)
      BC042281
      UniProtKB/Swiss-Prot
      P79888, Q5D0C5
      UniProtKB/TrEMBL
      A0A974HJS5
      Related
      ENSXLAP00005092410.1, ENSXLAT00005094093.1
      Conserved Domains (1) summary
      pfam01536
      Location:8 → 327
      SAM_decarbox; Adenosylmethionine decarboxylase

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      80532443..80552612 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041562083.1 → XP_041418017.1  S-adenosylmethionine decarboxylase proenzyme isoform X1

      UniProtKB/TrEMBL
      A0A8J1KL21, A0A974HJS5
      Related
      ENSXLAP00005092567.1, ENSXLAT00005094250.1
      Conserved Domains (1) summary
      cl03253
      Location:11 → 297
      SAM_decarbox; Adenosylmethionine decarboxylase

    RNA

    1. XR_001935612.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P79888.1 GenPept UniProtKB/Swiss-Prot:P79888

    Gene LinkOut

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    Research Materials