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    ap3b1.L adaptor related protein complex 3 subunit beta 1 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 443724, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ap3b1.L
    Official Full Name
    adaptor related protein complex 3 subunit beta 1 L homeolog
    Primary source
    Xenbase:XB-GENE-987211
    Locus tag
    XELAEV_18008187mg
    See related
    EnsemblRapid:ENSXLAG00005007852
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    hps; hps2; adtb3; ap3b1; adtb3a
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    Genomic context

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    See ap3b1.L in Genome Data Viewer
    Location:
    chromosome: 1L
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (201953357..202096895, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (188831135..188975042, complement)

    Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene orthopedia homeobox L homeolog Neighboring gene tubulin folding cofactor A L homeolog Neighboring gene secretory carrier membrane protein 1 L homeolog Neighboring gene LHFPL tetraspan subfamily member 2 L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Clone Names

    • MGC130707

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within anterograde synaptic vesicle transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of AP-3 adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in clathrin-coated vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    adaptor related protein complex 3 subunit beta 1 L homeolog
    Names
    adaptor related protein complex 3 beta 1 subunit L homeolog
    adaptor-related protein complex 3, beta 1 subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001091840.1 → NP_001085309.1  adaptor related protein complex 3 subunit beta 1 L homeolog

      See identical proteins and their annotated locations for NP_001085309.1

      Status: PROVISIONAL

      Source sequence(s)
      BC094141
      UniProtKB/TrEMBL
      A0A974I5V1, Q52KY5
      Related
      ENSXLAP00005022463.1, ENSXLAT00005023155.1
      Conserved Domains (4) summary
      pfam01602
      Location:59 → 598
      Adaptin_N; Adaptin N terminal region
      pfam12717
      Location:141 → 264
      Cnd1; non-SMC mitotic condensation complex subunit 1
      pfam14796
      Location:821 → 963
      AP3B1_C; Clathrin-adaptor complex-3 beta-1 subunit C-terminal
      sd00044
      Location:129 → 156
      HEAT; HEAT repeat [structural motif]

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      201953357..202096895 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018244870.2 → XP_018100359.1  adaptor related protein complex 3 subunit beta 1 L homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J0UBM7, A0A974I5V1
      Related
      ENSXLAP00005022588.1, ENSXLAT00005023287.1

    RNA

    1. XR_005964980.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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