cherp.S calcium homeostasis endoplasmic reticulum protein S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: cherp.S
Official Full Name: calcium homeostasis endoplasmic reticulum protein S homeolog
Primary source: Xenbase:XB-GENE-17337132
Locus tag: XELAEV_18001119mg
See related: EnsemblRapid:ENSXLAG00005031534
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: cherp
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Genomic context

Location:: chromosome: 1S

Exon count:: 19

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	1S	NC_054372.1 (105037537..105067663, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	Unplaced Scaffold	NW_016694812.1 (18346..48549)

Chromosome 1S - NC_054372.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within RNA processing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within intracellular calcium ion homeostasis	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in perinuclear region of cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: calcium homeostasis endoplasmic reticulum protein S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001086976.1 → NP_001080445.1 calcium homeostasis endoplasmic reticulum protein S homeolog

See identical proteins and their annotated locations for NP_001080445.1

Status: PROVISIONAL

Source sequence(s)

BC046715

UniProtKB/TrEMBL

A0A974I4C7, Q7ZWT5

Related

ENSXLAP00005094648.1, ENSXLAT00005096350.1

Conserved Domains (3) summary

smart00648
Location:13 → 65

SWAP; Suppressor-of-White-APricot splicing regulator

pfam01585
Location:825 → 872

G-patch; G-patch domain

pfam04818
Location:212 → 271

CTD_bind; RNA polymerase II-binding domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

105037537..105067663 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)