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    GLP4 germin-like protein 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838478, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GLP4
    Official Full Name
    germin-like protein 4
    Primary source
    TAIR:AT1G18970
    Locus tag
    AT1G18970
    See related
    Araport:AT1G18970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14D16.12; F14D16_12; germin-like protein 4
    Summary
    Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record).
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    Genomic context

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    See GLP4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (6554496..6555610, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene DDT domain superfamily Neighboring gene myb-like HTH transcriptional regulator family protein Neighboring gene uncharacterized protein Neighboring gene RmlC-like cupins superfamily protein Neighboring gene myosin-binding protein, putative (Protein of unknown function, DUF593) Neighboring gene Homeodomain-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_101754.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables manganese ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    germin-like protein 4
    NP_564067.2
    • germin-like protein 4 (GLP4); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT1G18980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6554496..6555610 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101754.3 → NP_564067.2  germin-like protein 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564067.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P92995, Q29PR9, Q9LMD0
      UniProtKB/TrEMBL
      A0A178WAW6, A0A5S9V337, A0A654ELW1
      Conserved Domains (1) summary
      cd02241
      Location:29 → 218
      cupin_OxOx; Oxalate oxidase (germin), cupin domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P92995.2

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