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    Ccdc82 coiled-coil domain containing 82 [ Mus musculus (house mouse) ]

    Gene ID: 66396, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Ccdc82provided by MGI
    Official Full Name
    coiled-coil domain containing 82provided by MGI
    Primary source
    MGI:MGI:1913646
    See related
    Ensembl:ENSMUSG00000079084 AllianceGenome:MGI:1913646
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2310043N13Rik
    Summary
    Predicted to be active in nucleus. Orthologous to human CCDC82 (coiled-coil domain containing 82). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in bladder adult (RPKM 4.3), liver E14 (RPKM 2.9) and 24 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Ccdc82 in Genome Data Viewer
    Location:
    9; 9 A1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (13246573..13292867)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (13246917..13292517)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930568E12 gene Neighboring gene STARR-seq mESC enhancer starr_23331 Neighboring gene Jrk-like Neighboring gene predicted gene, 26189 Neighboring gene mastermind like transcriptional coactivator 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:13269708-13269915 Neighboring gene STARR-seq mESC enhancer starr_23332 Neighboring gene per-hexamer repeat gene 4 Neighboring gene STARR-seq mESC enhancer starr_23333 Neighboring gene STARR-seq mESC enhancer starr_23334 Neighboring gene STARR-seq mESC enhancer starr_23335 Neighboring gene predicted gene, 51666

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Clone Names

    • FLJ23518, MGC107477

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 82

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025534.4 → NP_079810.2  coiled-coil domain-containing protein 82

      See identical proteins and their annotated locations for NP_079810.2

      Status: VALIDATED

      Source sequence(s)
      MH423685, MH423686
      Consensus CDS
      CCDS57651.1
      UniProtKB/Swiss-Prot
      Q3V462, Q6PG04
      Related
      ENSMUSP00000106212.3, ENSMUST00000110583.12
      Conserved Domains (2) summary
      pfam13846
      Location:98 → 211
      DUF4196; Domain of unknown function (DUF4196)
      pfam13926
      Location:273 → 425
      DUF4211; Domain of unknown function (DUF4211)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      13246573..13292867
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017313513.2 → XP_017169002.1  coiled-coil domain-containing protein 82 isoform X1

      UniProtKB/Swiss-Prot
      Q3V462, Q6PG04
      Related
      ENSMUSP00000150947.2, ENSMUST00000217444.4
      Conserved Domains (2) summary
      pfam13846
      Location:98 → 211
      DUF4196; Domain of unknown function (DUF4196)
      pfam13926
      Location:273 → 425
      DUF4211; Domain of unknown function (DUF4211)

    2. XM_036155176.1 → XP_036011069.1  coiled-coil domain-containing protein 82 isoform X2

      Conserved Domains (1) summary
      pfam13846
      Location:98 → 211
      DUF4196; Domain of unknown function (DUF4196)

    3. XM_017313511.2 → XP_017169000.1  coiled-coil domain-containing protein 82 isoform X1

      UniProtKB/Swiss-Prot
      Q3V462, Q6PG04
      Conserved Domains (2) summary
      pfam13846
      Location:98 → 211
      DUF4196; Domain of unknown function (DUF4196)
      pfam13926
      Location:273 → 425
      DUF4211; Domain of unknown function (DUF4211)

    4. XM_017313512.3 → XP_017169001.1  coiled-coil domain-containing protein 82 isoform X1

      UniProtKB/Swiss-Prot
      Q3V462, Q6PG04
      Conserved Domains (2) summary
      pfam13846
      Location:98 → 211
      DUF4196; Domain of unknown function (DUF4196)
      pfam13926
      Location:273 → 425
      DUF4211; Domain of unknown function (DUF4211)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6PG04.1 GenPept UniProtKB/Swiss-Prot:Q6PG04

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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