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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001361245.2 → NP_001348174.1 integrin alpha-E isoform 3 precursor
Status: VALIDATED
- Source sequence(s)
-
AL670399
- UniProtKB/TrEMBL
-
Q3U4V9
- Conserved Domains (3) summary
-
- smart00191
Location:565 → 624
- Int_alpha; Integrin alpha (beta-propellor repeats)
- cd01469
Location:195 → 370
- vWA_integrins_alpha_subunit; Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta ...
- pfam08441
Location:667 → 938
- Integrin_alpha2; Integrin alpha
-
NM_008399.4 → NP_032425.2 integrin alpha-E isoform 1 precursor
See identical proteins and their annotated locations for NP_032425.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AL670399
- Consensus CDS
-
CCDS24995.1
- UniProtKB/Swiss-Prot
- B1AUD5, Q60677
- UniProtKB/TrEMBL
- A2T0Z1, Q3U4V9
- Related
- ENSMUSP00000006101.4, ENSMUST00000006101.4
- Conserved Domains (3) summary
-
- smart00191
Location:566 → 625
- Int_alpha; Integrin alpha (beta-propellor repeats)
- cd01469
Location:196 → 371
- vWA_integrins_alpha_subunit; Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta ...
- pfam08441
Location:668 → 939
- Integrin_alpha2; Integrin alpha
RNA
-
NR_189133.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL670399
-
NR_189134.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL670399
-
NR_189135.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL670399
-
NR_189136.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL670399
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000077.7 Reference GRCm39 C57BL/6J
- Range
-
72981396..73038272
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_172944.2: Suppressed sequence
- Description
- NM_172944.2: This RefSeq was removed because currently there is insufficient support for the transcript and protein.