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    Ppp4r1l-ps protein phosphatase 4, regulatory subunit 1-like, pseudogene [ Mus musculus (house mouse) ]

    Gene ID: 100043911, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Ppp4r1l-psprovided by MGI
    Official Full Name
    protein phosphatase 4, regulatory subunit 1-like, pseudogeneprovided by MGI
    Primary source
    MGI:MGI:1924560
    See related
    Ensembl:ENSMUSG00000121504 AllianceGenome:MGI:1924560
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ppp4r1l; 1700007P14Rik; 5830403E09Rik; C030010B13Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 7.9), limb E14.5 (RPKM 7.4) and 28 other tissues See more
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    Genomic context

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    See Ppp4r1l-ps in Genome Data Viewer
    Location:
    2 H4; 2 97.06 cM
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (173421113..173501332, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (173579320..173659539, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 54093 Neighboring gene ankyrin repeat domain 60 Neighboring gene STARR-positive B cell enhancer ABC_E8799 Neighboring gene STARR-positive B cell enhancer ABC_E7891 Neighboring gene RAB22A, member RAS oncogene family Neighboring gene STARR-positive B cell enhancer ABC_E648 Neighboring gene microRNA 6340 Neighboring gene RIKEN cDNA 1700010B08 gene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Characterization of an exchangeable gene trap using pU-17 carrying a stop codon-beta geo cassette. Taniwaki T, et al. Dev Growth Differ, 2005 Apr. PMID 15840001
    2. Exchangeable gene trap using the Cre/mutated lox system. Araki K, et al. Cell Mol Biol (Noisy-le-grand), 1999 Jul. PMID 10512203
    3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027957.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL807384, AL845503
      Related
      ENSMUST00000141051.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      173421113..173501332 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001033179.1: Suppressed sequence

      Description
      NM_001033179.1: This RefSeq was suppressed because there is support for the transcript but the predicted protein is not supported by current protein (homology) data.

    2. NM_001039579.1: Suppressed sequence

      Description
      NM_001039579.1: This RefSeq was suppressed because there is support for the transcript but the predicted protein is not supported by current protein (homology) data.
    Nucleotide Protein Strain
    Heading Accession and Version

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