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    MAP3K2-DT MAP3K2 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 100506922, updated on 22-Oct-2024

    Summary

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    Official Symbol
    MAP3K2-DTprovided by HGNC
    Official Full Name
    MAP3K2 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:54088
    See related
    Ensembl:ENSG00000236682 AllianceGenome:HGNC:54088
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See MAP3K2-DT in Genome Data Viewer
    Location:
    2q14.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (127387438..127400580)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (127822718..127835862)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (128145014..128158156)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase kinase 2 Neighboring gene RNA, U6 small nuclear 1147, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:128109563-128110062 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:128111582-128112160 Neighboring gene uncharacterized LOC124906074 Neighboring gene MPRA-validated peak3853 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11931 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:128158054-128158766 Neighboring gene translation initiation factor IF-2-like Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11932 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16486 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16487 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:128172964-128173726 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16488 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:128180062-128180860 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:128180861-128181657 Neighboring gene microRNA 4783 Neighboring gene protein C, inactivator of coagulation factors Va and VIIIa

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Aberrant expression of long noncoding RNAs in cumulus cells isolated from PCOS patients. Huang X, et al. J Assist Reprod Genet, 2016 Jan. PMID 26650608, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_187125.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC068282

    2. NR_187126.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC068282
      Related
      ENST00000654207.4

    3. NR_187127.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC068282
      Related
      ENST00000433673.3

    4. NR_187128.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC068282
      Related
      ENST00000778721.1

    5. NR_187129.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC068282

    6. NR_187130.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC068282
      Related
      ENST00000778716.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      127387438..127400580
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      127822718..127835862
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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