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    MIR29B2CHG MIR29B2 and MIR29C host gene [ Homo sapiens (human) ]

    Gene ID: 100128537, updated on 17-Sep-2024

    Summary

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    Official Symbol
    MIR29B2CHGprovided by HGNC
    Official Full Name
    MIR29B2 and MIR29C host geneprovided by HGNC
    Primary source
    HGNC:HGNC:32018
    See related
    AllianceGenome:HGNC:32018
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C1orf132
    Expression
    Ubiquitous expression in fat (RPKM 4.1), adrenal (RPKM 3.4) and 24 other tissues See more
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    Genomic context

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    See MIR29B2CHG in Genome Data Viewer
    Location:
    1q32.2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (207801518..207822703, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (207048277..207069451, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (207974863..207996048, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene complement C3b/C4b receptor 1 like Neighboring gene complement C3b/C4b receptor 1 (Knops blood group) pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:207903492-207904170 Neighboring gene CRISPRi-validated cis-regulatory element chr1.11362 Neighboring gene Sharpr-MPRA regulatory region 12474 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1774 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2449 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:207925929-207926286 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:207935554-207936354 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:207936355-207937153 Neighboring gene cell division cycle associated 4 pseudogene 4 Neighboring gene CD46 molecule Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2450 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2451 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2452 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:207979012-207980211 Neighboring gene Sharpr-MPRA regulatory region 9321 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2453 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1775 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2454 Neighboring gene microRNA 29b-2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2455 Neighboring gene microRNA 29c Neighboring gene uncharacterized LOC148696 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2456 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2457 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1776 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2458 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2459 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2460 Neighboring gene uncharacterized LOC107985253 Neighboring gene CD34 molecule Neighboring gene NANOG hESC enhancer GRCh37_chr1:208091350-208091981 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:208131807-208132308 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:208132309-208132808 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2461 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2462 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:208137516-208138045 Neighboring gene long intergenic non-protein coding RNA 2767

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Expression and Function of C1orf132 Long-Noncoding RNA in Breast Cancer Cell Lines and Tissues. Shafaroudi AM, et al. Int J Mol Sci, 2021 Jun 23. PMID 34201896, Free PMC Article
    2. Widespread microRNA repression by Myc contributes to tumorigenesis. Chang TC, et al. Nat Genet, 2008 Jan. PMID 18066065, Free PMC Article
    3. Biological insights from 108 schizophrenia-associated genetic loci. Schizophrenia Working Group of the Psychiatric Genomics Consortium. Nature, 2014 Jul 24. PMID 25056061, Free PMC Article
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Expression and Function of C1orf132 Long-Noncoding RNA in Breast Cancer Cell Lines and Tissues.
      Title: Expression and Function of C1orf132 Long-Noncoding RNA in Breast Cancer Cell Lines and Tissues.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Biological insights from 108 schizophrenia-associated genetic loci.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Clone Names

    • FLJ35650, FLJ41182

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    involved_in miRNA-mediated post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of RISC complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135298.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AA806730, EU154351

    2. NR_135299.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains an alternate internal exon, resulting in a longer transcript than variant 1.
      Source sequence(s)
      AA806730, EU154352

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      207801518..207822703 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      207048277..207069451 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials