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    LINC00159 long intergenic non-protein coding RNA 159 [ Homo sapiens (human) ]

    Gene ID: 100551499, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00159provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 159provided by HGNC
    Primary source
    HGNC:HGNC:1285
    See related
    AllianceGenome:HGNC:1285
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C21orf44; NCRNA00159
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC00159 in Genome Data Viewer
    Location:
    21q22.11
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (32080481..32086295, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (30450174..30455981, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (33452794..33458608, complement)

    Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13245 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13246 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13247 Neighboring gene TPT1 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:33253321-33253821 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:33280341-33280874 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:33284969-33285779 Neighboring gene hormonally up-regulated Neu-associated kinase Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:33303660-33304223 Neighboring gene NANOG hESC enhancer GRCh37_chr21:33315105-33315606 Neighboring gene NANOG hESC enhancer GRCh37_chr21:33346858-33347382 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:33506465-33506966 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18358 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18359 Neighboring gene MIS18 kinetochore protein A Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:33650609-33651110 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:33651111-33651610 Neighboring gene MIS18A antisense RNA 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038033.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      BG210590

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

      Range
      32080481..32086295 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060945.1 Alternate T2T-CHM13v2.0

      Range
      30450174..30455981 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)