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    CT47A6 cancer/testis antigen family 47 member A6 [ Homo sapiens (human) ]

    Gene ID: 728062, updated on 17-Sep-2024

    Summary

    Official Symbol
    CT47A6provided by HGNC
    Official Full Name
    cancer/testis antigen family 47 member A6provided by HGNC
    Primary source
    HGNC:HGNC:33287
    See related
    Ensembl:ENSG00000226023 MIM:300785; AllianceGenome:HGNC:33287
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CT47.6
    Summary
    This locus represents a member of the cancer/testis gene family 47. This family, also known as CT47, is comprised of 13 nearly identical loci clustered at Xq24. [provided by RefSeq, Sep 2010]
    Expression
    Restricted expression toward testis (RPKM 4.8) See more
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    Genomic context

    See CT47A6 in Genome Data Viewer
    Location:
    Xq24
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (120958165..120961487, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (120092019..120095341, complement)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene cancer/testis antigen family 47 member A8 Neighboring gene cancer/testis antigen family 47 member A7 Neighboring gene cancer/testis antigen family 47 member A5 Neighboring gene cancer/testis antigen family 47 member A4

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    cancer/testis antigen 47A
    Names
    cancer/testis CT47 family, member 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_027739.1 RefSeqGene

      Range
      4997..8319
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001080141.2NP_001073610.1  cancer/testis antigen 47A

      See identical proteins and their annotated locations for NP_001073610.1

      Status: VALIDATED

      Source sequence(s)
      AL670379
      Consensus CDS
      CCDS35386.1
      UniProtKB/Swiss-Prot
      Q5JQC4, Q8N747
      UniProtKB/TrEMBL
      A0AAG2UWD2
      Related
      ENSP00000399711.2, ENST00000419194.3
      Conserved Domains (1) summary
      pfam15623
      Location:1263
      CT47; Cancer/testis gene family 47

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      120958165..120961487 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)