VLDLR-AS1 VLDLR antisense RNA 1 [Homo sapiens (human)] - Gene

Summary

Official Symbol: VLDLR-AS1provided by HGNC
Official Full Name: VLDLR antisense RNA 1provided by HGNC
Primary source: HGNC:HGNC:49621
See related: Ensembl:ENSG00000236404 AllianceGenome:HGNC:49621
Gene type: ncRNA
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: linc-VLDLR; lincRNA-VLDLR
Expression: Biased expression in ovary (RPKM 6.6), fat (RPKM 3.9) and 12 other tissues See more
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Genomic context

Location:: 9p24.2

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCh38.p14 (GCF_000001405.40)	9	NC_000009.12 (2535652..2622373, complement)
RS_2024_08	current	T2T-CHM13v2.0 (GCF_009914755.1)	9	NC_060933.1 (2538387..2625131, complement)
RS_2024_09	previous assembly	GRCh37.p13 (GCF_000001405.25)	9	NC_000009.11 (2535652..2622373, complement)

Chromosome 9 - NC_000009.12 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Long Noncoding RNA VLDLR-AS1 Levels in Serum Correlate with Combat-Related Chronic Mild Traumatic Brain Injury and Depression Symptoms in US Veterans.
Title: Long Noncoding RNA VLDLR-AS1 Levels in Serum Correlate with Combat-Related Chronic Mild Traumatic Brain Injury and Depression Symptoms in US Veterans.
High expression of Linc-VLDLR and ABCG2 gene in esophageal cancer cells affected the formation of esophageal cancer drug resistance
Title: Effects of long noncoding RNA (linc-VLDLR) existing in extracellular vesicles on the occurrence and multidrug resistance of esophageal cancer cells.
linc-VLDLR is identified as an EV-enriched lncRNA that contributes to cellular stress responses.
Title: Involvement of extracellular vesicle long noncoding RNA (linc-VLDLR) in tumor cell responses to chemotherapy.

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Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association study of a quantitative disordered gambling trait. EBI GWAS Catalog EBI GWAS CatalogPubMed

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

RH17486 (e-PCR)
- UniSTS:49190

A009P01 (e-PCR)
- UniSTS:12342

G32721 (e-PCR)
- UniSTS:117303

G32789 (e-PCR)
- UniSTS:117369

SHGC-34405 (e-PCR)
- UniSTS:60796

SHGC-155211 (e-PCR)
- UniSTS:184984

SHGC-146930 (e-PCR)
- UniSTS:172717

RH16191 (e-PCR)
- UniSTS:53431

A009Q38 (e-PCR)
- UniSTS:56310

SHGC-34403 (e-PCR)
- UniSTS:60669

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.