U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC01857 long intergenic non-protein coding RNA 1857 [ Homo sapiens (human) ]

    Gene ID: 102724714, updated on 22-Oct-2024

    Summary

    Official Symbol
    LINC01857provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1857provided by HGNC
    Primary source
    HGNC:HGNC:52673
    See related
    Ensembl:ENSG00000224137 AllianceGenome:HGNC:52673
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in lymph node (RPKM 6.9), spleen (RPKM 6.0) and 2 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LINC01857 in Genome Data Viewer
    Location:
    2q33.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (207662384..207679122)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (208136456..208153623)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (208527108..208543846)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene cAMP responsive element binding protein 1 Neighboring gene methyltransferase 21A, HSPA lysine Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17042 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12281 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:208490584-208491288 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:208491289-208491991 Neighboring gene ribosomal protein S29 pseudogene 9 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:208537981-208538753 Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 14B pseudogene 2 Neighboring gene RNA, U6 small nuclear 664, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135566.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC079767, AC096772
      Related
      ENST00000691648.2
    2. NR_135567.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA769410, AA971248, AC079767, AW969319

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      207662384..207679122
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      208136456..208153623
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)