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    COX7B cytochrome c oxidase subunit 7B [ Sus scrofa (pig) ]

    Gene ID: 100516480, updated on 18-Sep-2024

    Summary

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    Official Symbol
    COX7Bprovided by VGNC
    Official Full Name
    cytochrome c oxidase subunit 7Bprovided by VGNC
    Primary source
    VGNC:VGNC:106446
    See related
    Ensembl:ENSSSCG00000032129
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in heart (RPKM 757.4), psoas major muscle (RPKM 458.9) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See COX7B in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) X NC_010461.5 (61962383..61969011)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) X NC_010461.4 (70881132..70887766)

    Chromosome X - NC_010461.5Genomic Context describing neighboring genes Neighboring gene ATRX chromatin remodeler Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene magnesium transporter 1 Neighboring gene ATPase copper transporting alpha Neighboring gene cytochrome c pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mitochondrial electron transport, cytochrome c to oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytochrome c oxidase subunit 7B, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010461.5 Reference Sscrofa11.1 Primary Assembly

      Range
      61962383..61969011
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003135201.3 → XP_003135249.1  cytochrome c oxidase subunit 7B, mitochondrial

      UniProtKB/TrEMBL
      A0A287BJ57, A0A4X1W2L2, A0A8D0NBS4, A0A8D0WV14
      Related
      ENSSSCP00000056639.1, ENSSSCT00000053016.3
      Conserved Domains (1) summary
      pfam05392
      Location:1 → 79
      COX7B; Cytochrome C oxidase chain VIIB
    Nucleotide Protein
    Heading Accession and Version

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