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    YBX3 Y-box binding protein 3 [ Sus scrofa (pig) ]

    Gene ID: 100518125, updated on 17-Aug-2024

    Summary

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    Official Symbol
    YBX3provided by VGNC
    Official Full Name
    Y-box binding protein 3provided by VGNC
    Primary source
    VGNC:VGNC:95021
    See related
    Ensembl:ENSSSCG00000000633
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Biased expression in longissimus dorsi muscle (RPKM 2313.3), psoas major muscle (RPKM 1638.1) and 3 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See YBX3 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (61337868..61361269)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (64060833..64084239)

    Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene taste 2 receptor member 8 Neighboring gene taste 2 receptor member 7 Neighboring gene serine/threonine/tyrosine kinase 1 Neighboring gene mago homolog B, exon junction complex subunit

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
    2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Y-box-binding protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

      Range
      61337868..61361269
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003126475.3 → XP_003126523.1  Y-box-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A5G2QPK7, A0A8D0QKU4, A0A8D1QSK6, I3LQF8
      Related
      ENSSSCP00000026338.1, ENSSSCT00000027246.4
      Conserved Domains (1) summary
      pfam00313
      Location:100 → 169
      CSD; 'Cold-shock' DNA-binding domain

    2. XM_003355575.3 → XP_003355623.1  Y-box-binding protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A4X1V343, A0A5G2QPK7, A0A8D1QSK6, F1SQ46
      Related
      ENSSSCP00000000665.2, ENSSSCT00000000680.5
      Conserved Domains (1) summary
      pfam00313
      Location:100 → 169
      CSD; 'Cold-shock' DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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