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    SZRD1 SUZ RNA binding domain containing 1 [ Sus scrofa (pig) ]

    Gene ID: 100523067, updated on 8-Mar-2024

    Summary

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    Official Symbol
    SZRD1provided by VGNC
    Official Full Name
    SUZ RNA binding domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:98622
    See related
    Ensembl:ENSSSCG00000031083
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in spleen (RPKM 30.8), kidney (RPKM 27.9) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See SZRD1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (75459124..75485326)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (69774262..69800471)

    Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene F-box protein 42 Neighboring gene uncharacterized LOC100522143 Neighboring gene uncharacterized LOC110255192 Neighboring gene spermatogenesis associated 21 Neighboring gene NECAP endocytosis associated 2 Neighboring gene ciliary rootlet coiled-coil, rootletin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    SUZ domain-containing protein 1
    Names
    UPF0485 protein C1orf144 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

      Range
      75459124..75485326
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005665044.3 → XP_005665101.1  SUZ domain-containing protein 1

      See identical proteins and their annotated locations for XP_005665101.1

      UniProtKB/TrEMBL
      A0A287AWQ5, A0A8D0M0D6, A0A8D1EVY4
      Related
      ENSSSCP00000048297.2, ENSSSCT00000062407.3
      Conserved Domains (2) summary
      pfam12752
      Location:55 → 106
      SUZ; SUZ domain
      pfam12901
      Location:118 → 150
      SUZ-C; SUZ-C motif
    Nucleotide Protein
    Heading Accession and Version

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