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    AGTRAP angiotensin II receptor associated protein [ Sus scrofa (pig) ]

    Gene ID: 100524812, updated on 17-Aug-2024

    Summary

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    Official Symbol
    AGTRAPprovided by VGNC
    Official Full Name
    angiotensin II receptor associated proteinprovided by VGNC
    Primary source
    VGNC:VGNC:85193
    See related
    Ensembl:ENSSSCG00000022401
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in kidney (RPKM 33.4), ovary (RPKM 19.1) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See AGTRAP in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (71825319..71836812)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (65705213..65714909, complement)

    Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene F-box protein 6 Neighboring gene mitotic arrest deficient 2 like 2 Neighboring gene dorsal inhibitory axon guidance protein Neighboring gene uncharacterized LOC102163957 Neighboring gene uncharacterized LOC110261388 Neighboring gene uncharacterized protein C1orf167 Neighboring gene methylenetetrahydrofolate reductase Neighboring gene chloride voltage-gated channel 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in angiotensin-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of blood pressure IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    type-1 angiotensin II receptor-associated protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

      Range
      71825319..71836812
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003127573.6 → XP_003127621.1  type-1 angiotensin II receptor-associated protein isoform X2

      UniProtKB/TrEMBL
      A0A8D0MEY5, A0A8D0WF25, A0A8D1R7S7, A0A8D1X063
      Conserved Domains (1) summary
      pfam06396
      Location:9 → 151
      AGTRAP; Angiotensin II, type I receptor-associated protein (AGTRAP)

    2. XM_003127572.6 → XP_003127620.1  type-1 angiotensin II receptor-associated protein isoform X3

      UniProtKB/TrEMBL
      A0A8D0MEF1, A0A8D0MEY5, A0A8D0WF25, A0A8D1R7S7, A0A8D1R801, A0A8D1X063, I3LRT0
      Related
      ENSSSCP00000026820.2, ENSSSCT00000027174.4
      Conserved Domains (1) summary
      pfam06396
      Location:9 → 144
      AGTRAP; Angiotensin II, type I receptor-associated protein (AGTRAP)

    3. XM_021095340.1 → XP_020950999.1  type-1 angiotensin II receptor-associated protein isoform X5

      Conserved Domains (1) summary
      cl05741
      Location:9 → 57
      AGTRAP; Angiotensin II, type I receptor-associated protein (AGTRAP)

    4. XM_021095341.1 → XP_020951000.1  type-1 angiotensin II receptor-associated protein isoform X6

      Conserved Domains (1) summary
      cl05741
      Location:45 → 74
      AGTRAP; Angiotensin II, type I receptor-associated protein (AGTRAP)

    5. XM_013998984.2 → XP_013854438.1  type-1 angiotensin II receptor-associated protein isoform X4

      UniProtKB/TrEMBL
      A0A4X1W2D0, A0A8D0WIN7

    6. XM_013998983.2 → XP_013854437.1  type-1 angiotensin II receptor-associated protein isoform X1

      UniProtKB/TrEMBL
      A0A8W4FAG7
      Related
      ENSSSCP00000076272.1, ENSSSCT00000100213.1
    Nucleotide Protein
    Heading Accession and Version

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