SLC6A14 solute carrier family 6 member 14 [Sus scrofa (pig)] - Gene

Summary

Gene symbol: SLC6A14
Gene description: solute carrier family 6 member 14
See related: Ensembl:ENSSSCG00000022372
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression: Low expression observed in reference dataset See more
Orthologs: human mouse all
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Genomic context

Location:: chromosome: X

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	X	NC_010461.5 (95482494..95507200)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	X	NC_010461.4 (110086662..110139726)

Chromosome X - NC_010461.5 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

These results indicate that SLC6A14 is not a positional candidate gene for the quantitative trait loci affecting fatness and growth traits in pigs.
Title: Isolation and molecular characterization of the porcine SLC6A14 gene excludes it as a candidate gene for fat deposition and growth.

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables L-proline transmembrane transporter activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in sodium ion transmembrane transport	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)

Names: amino acid transporter B0; solute carrier family 6 (neurotransmitter transporter), member 14

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001348402.1 → NP_001335331.1 sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)

Status: VALIDATED

Source sequence(s)

AEMK02000122, EW318149, EW405146, GQ387269

UniProtKB/TrEMBL

A0A4X1W4T9, A0A8D1B727, A0A8D1C7C8, A0A8D1Z7Z3, K7GNX7

Related

ENSSSCP00000029582.1, ENSSSCT00000033120.4

Conserved Domains (1) summary

cd11501
Location:36 → 638

SLC6sbd_ATB0; Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

NC_010461.5 Reference Sscrofa11.1 Primary Assembly

Range

95482494..95507200

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GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_001166042.1: Suppressed sequence

Description

NM_001166042.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.