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    PPIE peptidylprolyl isomerase E [ Sus scrofa (pig) ]

    Gene ID: 100516562, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PPIEprovided by VGNC
    Official Full Name
    peptidylprolyl isomerase Eprovided by VGNC
    Primary source
    VGNC:VGNC:98537
    See related
    Ensembl:ENSSSCG00000003664
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 11.4), spleen (RPKM 7.1) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See PPIE in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (95548582..95566470)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (88636947..88652062)

    Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene 5'-nucleotidase, cytosolic IA Neighboring gene hippocalcin like 4 Neighboring gene succinyl-CoA:3-ketoacid coenzyme A transferase 2, mitochondrial-like Neighboring gene bone morphogenetic protein 8b Neighboring gene uncharacterized LOC102164363

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein peptidyl-prolyl isomerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peptidyl-prolyl cis-trans isomerase E

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

      Range
      95548582..95566470
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013999199.2 → XP_013854653.2  peptidyl-prolyl cis-trans isomerase E isoform X2

      UniProtKB/TrEMBL
      A0A8D0ZNK4
      Conserved Domains (2) summary
      cd01926
      Location:170 → 328
      cyclophilin_ABH_like; Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding ...
      cd12347
      Location:35 → 110
      RRM_PPIE; RNA recognition motif in cyclophilin-33 (Cyp33) and similar proteins

    2. XM_005665257.2 → XP_005665314.2  peptidyl-prolyl cis-trans isomerase E isoform X4

      UniProtKB/TrEMBL
      A0A480KBQ5, A0A4X1VUW7, A0A8D0LF37
      Conserved Domains (2) summary
      cd01926
      Location:163 → 321
      cyclophilin_ABH_like; Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding ...
      cd12347
      Location:35 → 103
      RRM_PPIE; RNA recognition motif in cyclophilin-33 (Cyp33) and similar proteins

    3. XM_013999198.2 → XP_013854652.1  peptidyl-prolyl cis-trans isomerase E isoform X6

      UniProtKB/TrEMBL
      A0A8D0ZNK4
      Conserved Domains (3) summary
      COG0724
      Location:5 → 201
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd01926
      Location:147 → 305
      cyclophilin_ABH_like; cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which ...
      cd12347
      Location:8 → 87
      RRM_PPIE; RNA recognition motif in cyclophilin-33 (Cyp33) and similar proteins

    4. XM_003127817.5 → XP_003127865.1  peptidyl-prolyl cis-trans isomerase E isoform X8

      UniProtKB/TrEMBL
      A0A480KBQ5, A0A481BD13, A0A4X1VUW7, A0A8D0LF37
      Related
      ENSSSCP00000003969.4, ENSSSCT00000004060.5
      Conserved Domains (3) summary
      COG0724
      Location:5 → 194
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd01926
      Location:140 → 298
      cyclophilin_ABH_like; cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which ...
      cd12347
      Location:8 → 80
      RRM_PPIE; RNA recognition motif in cyclophilin-33 (Cyp33) and similar proteins

    5. XM_005665255.2 → XP_005665312.1  peptidyl-prolyl cis-trans isomerase E isoform X3

      UniProtKB/TrEMBL
      A0A286ZJY9, A0A480VAH3, A0A481D4D5, A0A4X1VPF4
      Related
      ENSSSCP00000031786.3, ENSSSCT00000046673.3
      Conserved Domains (3) summary
      COG0724
      Location:11 → 219
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd01926
      Location:165 → 323
      cyclophilin_ABH_like; cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which ...
      cd12347
      Location:36 → 105
      RRM_PPIE; RNA recognition motif in cyclophilin-33 (Cyp33) and similar proteins

    6. XM_013999195.2 → XP_013854649.1  peptidyl-prolyl cis-trans isomerase E isoform X1

      UniProtKB/TrEMBL
      A0A481D4D5, A0A4X1VPF4
      Conserved Domains (3) summary
      COG0724
      Location:11 → 226
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd01926
      Location:172 → 330
      cyclophilin_ABH_like; cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which ...
      cd12347
      Location:36 → 112
      RRM_PPIE; RNA recognition motif in cyclophilin-33 (Cyp33) and similar proteins

    7. XM_005665258.2 → XP_005665315.1  peptidyl-prolyl cis-trans isomerase E isoform X10

      See identical proteins and their annotated locations for XP_005665315.1

      Conserved Domains (2) summary
      cd01926
      Location:74 → 232
      cyclophilin_ABH_like; cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which ...
      cl17169
      Location:1 → 14
      RRM_SF; RNA recognition motif (RRM) superfamily

    8. XM_021095990.1 → XP_020951649.1  peptidyl-prolyl cis-trans isomerase E isoform X7

      UniProtKB/TrEMBL
      A0A480KBQ5, A0A4X1VUW7, A0A8D0LF37
      Related
      ENSSSCP00000061294.2, ENSSSCT00000091355.2
      Conserved Domains (2) summary
      cd01926
      Location:142 → 300
      cyclophilin_ABH_like; cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which ...
      cd12347
      Location:14 → 82
      RRM_PPIE; RNA recognition motif in cyclophilin-33 (Cyp33) and similar proteins

    9. XM_013999200.2 → XP_013854654.1  peptidyl-prolyl cis-trans isomerase E isoform X9

      UniProtKB/TrEMBL
      A0A8D1I8Q2
      Conserved Domains (2) summary
      cd01926
      Location:81 → 239
      cyclophilin_ABH_like; cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which ...
      cl17169
      Location:9 → 21
      RRM_SF; RNA recognition motif (RRM) superfamily

    10. XM_013999197.2 → XP_013854651.1  peptidyl-prolyl cis-trans isomerase E isoform X5

      UniProtKB/TrEMBL
      A0A8D0ZNK4, A0A8W4FM44
      Related
      ENSSSCP00000080563.1, ENSSSCT00000100782.1
      Conserved Domains (3) summary
      COG0724
      Location:12 → 165
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd01926
      Location:149 → 307
      cyclophilin_ABH_like; cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which ...
      cd12347
      Location:14 → 89
      RRM_PPIE; RNA recognition motif in cyclophilin-33 (Cyp33) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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