PDPN podoplanin [Sus scrofa (pig)] - Gene

Summary

Official Symbol: PDPNprovided by VGNC
Official Full Name: podoplaninprovided by VGNC
Primary source: VGNC:VGNC:91288
See related: Ensembl:ENSSSCG00000003451
Gene type: protein coding
RefSeq status: MODEL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression: Broad expression in lung (RPKM 63.1), ovary (RPKM 22.1) and 6 other tissues See more
Orthologs: human mouse all
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Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	6	NC_010448.4 (73019063..73050000)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	6	NC_010448.3 (67223489..67254534)

Chromosome 6 - NC_010448.4 Genomic Context describing neighboring genes

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

See details

Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Submit: New GeneRIF Correction

Function	Evidence Code	Pubs
enables chemokine binding	IEA Inferred from Electronic Annotation more info	PubMed
enables protein-folding chaperone binding	IEA Inferred from Electronic Annotation more info	PubMed
enables signaling receptor binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in Rho protein signal transduction	IEA Inferred from Electronic Annotation more info	PubMed
involved_in actin-mediated cell contraction	IEA Inferred from Electronic Annotation more info	PubMed
involved_in cell morphogenesis	IEA Inferred from Electronic Annotation more info	PubMed
involved_in cell-cell adhesion	IEA Inferred from Electronic Annotation more info	PubMed
involved_in lung development	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of cell migration	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of epithelial to mesenchymal transition	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of extracellular matrix disassembly	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of platelet aggregation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of lamellipodium morphogenesis	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of myofibroblast contraction	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of substrate adhesion-dependent cell spreading	IEA Inferred from Electronic Annotation more info	PubMed
involved_in response to hyperoxia	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in apical plasma membrane	IEA Inferred from Electronic Annotation more info	PubMed
located_in basolateral plasma membrane	IEA Inferred from Electronic Annotation more info	PubMed
located_in filopodium	IEA Inferred from Electronic Annotation more info	PubMed
located_in lamellipodium	IEA Inferred from Electronic Annotation more info	PubMed