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    CG5850 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 34327, updated on 28-Oct-2024

    Summary

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    Official Symbol
    CG5850provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0032172
    Locus tag
    Dmel_CG5850
    See related
    AllianceGenome:FB:FBgn0032172
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG5850
    Summary
    Predicted to enable transmembrane transporter activity. Predicted to be active in membrane. Is expressed in several structures, including adult head; circulatory system primordium; embryonic/larval fat body; and head mesoderm. Orthologous to human TMEM184C (transmembrane protein 184C). [provided by Alliance of Genome Resources, Oct 2024]
    Orthologs
    all
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    Genomic context

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    See CG5850 in Genome Data Viewer
    Location:
    30F2-30F2; 2-38 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (9959248..9963949, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (9959248..9963949, complement)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene antisense RNA:CR44872 Neighboring gene antisense RNA:CR43683 Neighboring gene DNA replication-related element factor Neighboring gene Ribosomal protein L13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Metabolomic analysis of the selection response of Drosophila melanogaster to environmental stress: are there links to gene expression and phenotypic traits? Malmendal A, et al. Naturwissenschaften, 2013 May. PMID 23571708
    2. Anion-sensitive fluorophore identifies the Drosophila swell-activated chloride channel in a genome-wide RNA interference screen. Stotz SC, et al. PLoS One, 2012. PMID 23056495, Free PMC Article
    3. Chromatin profiling using targeted DNA adenine methyltransferase. van Steensel B, et al. Nat Genet, 2001 Mar. PMID 11242113
    4. Analyzing the function of a hox gene: an evolutionary approach. Michaut L, et al. Dev Growth Differ, 2011 Dec. PMID 22150153
    5. Hairy transcriptional repression targets and cofactor recruitment in Drosophila. Bianchi-Frias D, et al. PLoS Biol, 2004 Jul. PMID 15252443, Free PMC Article

    See all (31) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG5850-PA
    CG5850-PC
    CG5850-PD
    CG5850-PE
    CG5850-PF
    CG5850-PG
    CG5850-PH

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      9959248..9963949 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001259026.2 → NP_001245955.1  uncharacterized protein Dmel_CG5850, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001245955.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q960V9, Q9VL56
      Conserved Domains (1) summary
      pfam03619
      Location:51 → 317
      Solute_trans_a; Organic solute transporter Ostalpha

    2. NM_001042885.3 → NP_001036350.2  uncharacterized protein Dmel_CG5850, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001036350.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0E8R8
      Conserved Domains (1) summary
      pfam03619
      Location:51 → 317
      Solute_trans_a; Organic solute transporter Ostalpha

    3. NM_001259027.2 → NP_001245956.1  uncharacterized protein Dmel_CG5850, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001245956.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9NEX9
      Conserved Domains (1) summary
      pfam03619
      Location:51 → 317
      Solute_trans_a; Organic solute transporter Ostalpha

    4. NM_001259028.2 → NP_001245957.1  uncharacterized protein Dmel_CG5850, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001245957.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9NCT0
      Conserved Domains (1) summary
      pfam03619
      Location:51 → 317
      Solute_trans_a; Organic solute transporter Ostalpha

    5. NM_135490.4 → NP_609334.1  uncharacterized protein Dmel_CG5850, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_609334.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q960V9, Q9VL56
      Related
      FBpp0079486
      Conserved Domains (1) summary
      pfam03619
      Location:51 → 317
      Solute_trans_a; Organic solute transporter Ostalpha

    6. NM_001273381.2 → NP_001260310.1  uncharacterized protein Dmel_CG5850, isoform G [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001260310.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PD30
      Conserved Domains (1) summary
      pfam03619
      Location:51 → 317
      Solute_trans_a; Organic solute transporter Ostalpha

    7. NM_001382184.1 → NP_001369126.1  uncharacterized protein Dmel_CG5850, isoform H [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A6H2EIL3
      Conserved Domains (1) summary
      pfam03619
      Location:51 → 317
      Solute_trans_a; Organic solute transporter Ostalpha
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A6H2EIL3 A0A6H2EIL3
    M9NCT0 M9NCT0
    M9NEX9 M9NEX9
    M9PD30 M9PD30
    Q0E8R8 Q0E8R8
    Q9VL56 Q9VL56

    Gene LinkOut

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