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    RpL9 Ribosomal protein L9 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 34526, updated on 28-Oct-2024

    Summary

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    Official Symbol
    RpL9provided by FlyBase
    Official Full Name
    Ribosomal protein L9provided by FlyBase
    Primary source
    FLYBASE:FBgn0015756
    Locus tag
    Dmel_CG6141
    See related
    AllianceGenome:FB:FBgn0015756
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    anon-EST:fe3A6; anon-WO0153538.25; anon-WO0153538.26; anon-WO0153538.27; CG6141; Dmel\CG6141; L6; L9; M(2)32D; Rp L9; rpL9; Rpl9
    Summary
    A structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Located in cytosolic ribosome. Is expressed in adult head; adult heart; organism; and spermatozoon. Orthologous to human RPL9 (ribosomal protein L9). [provided by Alliance of Genome Resources, Oct 2024]
    Orthologs
    all
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    Genomic context

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    See RpL9 in Genome Data Viewer
    Location:
    32C1-32C1; 2-44 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (11002758..11004189, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (11002758..11004189, complement)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene Tubulin tyrosine ligase-like 4A Neighboring gene aubergine Neighboring gene lectin-33A Neighboring gene Nucleoporin 154kD Neighboring gene antisense RNA:CR45778 Neighboring gene Arginine methyltransferase 8 Neighboring gene Deoxyuridine triphosphatase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Systematic generation of high-resolution deletion coverage of the Drosophila melanogaster genome. Parks AL, et al. Nat Genet, 2004 Mar. PMID 14981519
    2. Genetic and molecular characterization of sting, a gene involved in crystal formation and meiotic drive in the male germ line of Drosophila melanogaster. Schmidt A, et al. Genetics, 1999 Feb. PMID 9927466, Free PMC Article
    3. Tissue-specific expression of ribosomal protein paralogue eRpL22-like in Drosophila melanogaster eye development. Gershman BW, et al. Dev Dyn, 2020 Sep. PMID 32353187, Free PMC Article
    4. Developmental genetics of the essential Drosophila nucleoporin nup154: allelic differences due to an outward-directed promoter in the P-element 3' end. Kiger AA, et al. Genetics, 1999 Oct. PMID 10511559, Free PMC Article
    5. A newly identified Minute locus, M(2)32D, encodes the ribosomal protein L9 in Drosophila melanogaster. Schmidt A, et al. Mol Gen Genet, 1996 Jun 12. PMID 8676882

    See all (76) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome HDA PubMed 
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in cytoplasmic translation IC
    Inferred by Curator
    more info
    		 PubMed 
    involved_in cytoplasmic translation TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of cytosolic large ribosomal subunit TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in cytosolic ribosome HDA PubMed 
    located_in cytosolic ribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ribosomal protein L9
    Names
    CG6141-PA
    CG6141-PB
    CG6141-PC
    RpL9-PA
    RpL9-PB
    RpL9-PC
    anon-fast-evolving-3A6

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      11002758..11004189 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001298897.1 → NP_001285826.1  ribosomal protein L9, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001285826.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A4V0M0, P50882, Q4V5D8, Q9VKL6, Q9VKL7
      UniProtKB/TrEMBL
      X2JDU0
      Conserved Domains (1) summary
      cl30086
      Location:1 → 189
      Ribosomal_L6; Ribosomal protein L6

    2. NM_057813.4 → NP_477161.1  ribosomal protein L9, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_477161.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A4V0M0, P50882, Q4V5D8, Q9VKL6, Q9VKL7
      UniProtKB/TrEMBL
      X2JDU0
      Related
      FBpp0079752
      Conserved Domains (1) summary
      cl30086
      Location:1 → 189
      Ribosomal_L6; Ribosomal protein L6

    3. NM_164955.2 → NP_723644.1  ribosomal protein L9, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_723644.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A4V0M0, P50882, Q4V5D8, Q9VKL6, Q9VKL7
      UniProtKB/TrEMBL
      X2JDU0
      Related
      FBpp0079753
      Conserved Domains (1) summary
      cl30086
      Location:1 → 189
      Ribosomal_L6; Ribosomal protein L6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P50882.2 P50882
    X2JDU0 X2JDU0

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