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    Ccl8 C-C motif chemokine ligand 8 [ Mus musculus (house mouse) ]

    Gene ID: 20307, updated on 28-Oct-2024

    Summary

    Official Symbol
    Ccl8provided by MGI
    Official Full Name
    C-C motif chemokine ligand 8provided by MGI
    Primary source
    MGI:MGI:101878
    See related
    Ensembl:ENSMUSG00000009185 AllianceGenome:MGI:101878
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    HC14; Mcp2; MCP-2; Scya8; 1810063B20Rik
    Summary
    Predicted to enable chemokine receptor binding activity; phospholipase activator activity; and protein kinase activity. Acts upstream of or within positive regulation of myoblast differentiation and positive regulation of myoblast fusion. Located in extracellular space. Is expressed in ductus deferens; epididymis; esophagus; heart ventricle; and testis. Orthologous to human CCL8 (C-C motif chemokine ligand 8). [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Biased expression in mammary gland adult (RPKM 20.6), bladder adult (RPKM 12.8) and 8 other tissues See more
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    Genomic context

    See Ccl8 in Genome Data Viewer
    Location:
    11 C; 11 49.91 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (82006011..82007625)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (82115185..82116799)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 38913 Neighboring gene C-C motif chemokine ligand 12 Neighboring gene STARR-seq mESC enhancer starr_30171 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:81988408-81988591 Neighboring gene C-C motif chemokine ligand 1 Neighboring gene STARR-seq mESC enhancer starr_30173 Neighboring gene predicted gene, 38577

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (5) 
    • Targeted (3) 

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables CCR chemokine receptor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables chemokine activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables chemokine activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables heparin binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables phospholipase activator activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein kinase activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in antimicrobial humoral immune response mediated by antimicrobial peptide IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in antimicrobial humoral immune response mediated by antimicrobial peptide ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in calcium ion transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cell chemotaxis IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cell-cell signaling ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in chemokine-mediated signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in eosinophil chemotaxis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in exocytosis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in inflammatory response IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in inflammatory response IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in intracellular calcium ion homeostasis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in killing of cells of another organism ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation by host of viral genome replication ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of cell migration IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within positive regulation of myoblast differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within positive regulation of myoblast fusion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in extracellular space IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    C-C motif chemokine 8
    Names
    chemokine (C-C motif) ligand 8
    monocyte chemoattractant protein-2
    monocyte chemotactic protein 2
    small-inducible cytokine A8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_021443.3NP_067418.1  C-C motif chemokine 8 precursor

      See identical proteins and their annotated locations for NP_067418.1

      Status: VALIDATED

      Source sequence(s)
      AI449326, BC117101, BX639248, BY707942
      Consensus CDS
      CCDS36248.1
      UniProtKB/Swiss-Prot
      Q9Z121
      UniProtKB/TrEMBL
      Q149U7
      Related
      ENSMUSP00000009329.3, ENSMUST00000009329.3
      Conserved Domains (1) summary
      cd00272
      Location:3289
      Chemokine_CC; Chemokine_CC: 1 of 4 subgroup designations based on the arrangement of the two N-terminal cysteine residues; includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity; some members (e.g. ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      82006011..82007625
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)