U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    D17H6S53E DNA segment, Chr 17, human D6S53E [ Mus musculus (house mouse) ]

    Gene ID: 114585, updated on 2-Nov-2024

    Summary

    Official Symbol
    D17H6S53Eprovided by MGI
    Official Full Name
    DNA segment, Chr 17, human D6S53Eprovided by MGI
    Primary source
    MGI:MGI:90673
    See related
    Ensembl:ENSMUSG00000043311 AllianceGenome:MGI:90673
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    G4; NG34
    Summary
    Orthologous to human C6orf47 (chromosome 6 open reading frame 47). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in duodenum adult (RPKM 7.6), adrenal adult (RPKM 5.9) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See D17H6S53E in Genome Data Viewer
    Location:
    17 B1; 17 18.59 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (35345378..35347831)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (35126402..35128855)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene lymphocyte antigen 6 family member G5B Neighboring gene casein kinase 2, beta polypeptide Neighboring gene G patch domain and ankyrin repeats 1 Neighboring gene predicted gene 20522 Neighboring gene apolipoprotein M Neighboring gene STARR-positive B cell enhancer ABC_E5599 Neighboring gene BCL2-associated athanogene 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    uncharacterized protein C6orf47 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_033477.2NP_258438.1  uncharacterized protein C6orf47 homolog

      See identical proteins and their annotated locations for NP_258438.1

      Status: VALIDATED

      Source sequence(s)
      CR974444
      Consensus CDS
      CCDS28686.1
      UniProtKB/Swiss-Prot
      Q9Z1R4
      UniProtKB/TrEMBL
      B2RS43
      Related
      ENSMUSP00000061264.6, ENSMUST00000061859.7
      Conserved Domains (1) summary
      pfam15576
      Location:16264
      DUF4661; Domain of unknown function (DUF4661)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      35345378..35347831
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)