U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ccdc97 coiled-coil domain containing 97 [ Mus musculus (house mouse) ]

    Gene ID: 52132, updated on 28-Oct-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Ccdc97provided by MGI
    Official Full Name
    coiled-coil domain containing 97provided by MGI
    Primary source
    MGI:MGI:1196455
    See related
    Ensembl:ENSMUSG00000002608 AllianceGenome:MGI:1196455
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D7Ertd462e; 1200014H14Rik; 2810446P04Rik
    Summary
    Predicted to be located in nucleus. Orthologous to human CCDC97 (coiled-coil domain containing 97). [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Ubiquitous expression in thymus adult (RPKM 35.1), ovary adult (RPKM 33.9) and 28 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Ccdc97 in Genome Data Viewer
    Location:
    7 A3; 7 13.99 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (25410537..25418460, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (25711112..25719035, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E9022 Neighboring gene STARR-positive B cell enhancer ABC_E6524 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:26466931-26467040 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:26468633-26468786 Neighboring gene B9 protein domain 2 Neighboring gene transforming growth factor, beta 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:26503991-26504174 Neighboring gene heterogeneous nuclear ribonucleoprotein U-like 1 Neighboring gene STARR-seq mESC enhancer starr_18313 Neighboring gene AXL receptor tyrosine kinase

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
    2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    3. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
    4. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
    5. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    coiled-coil domain-containing protein 97

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001368381.1 → NP_001355310.1  coiled-coil domain-containing protein 97 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC162614

    2. NM_001368382.1 → NP_001355311.1  coiled-coil domain-containing protein 97 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC162614

    3. NM_001368383.1 → NP_001355312.1  coiled-coil domain-containing protein 97 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC162614

    4. NM_001368384.1 → NP_001355313.1  coiled-coil domain-containing protein 97 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC162614

    5. NM_028771.3 → NP_083047.1  coiled-coil domain-containing protein 97 isoform 1

      See identical proteins and their annotated locations for NP_083047.1

      Status: VALIDATED

      Source sequence(s)
      AC162614
      Consensus CDS
      CCDS20994.1
      UniProtKB/Swiss-Prot
      Q922V3, Q9DBT3
      Related
      ENSMUSP00000002683.3, ENSMUST00000002683.3
      Conserved Domains (1) summary
      pfam09747
      Location:159 → 326
      DUF2052; Coiled-coil domain containing protein (DUF2052)

    RNA

    1. NR_160796.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC162614

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      25410537..25418460 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9DBT3.1 GenPept UniProtKB/Swiss-Prot:Q9DBT3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools