samm50 SAMM50 sorting and assembly machinery component [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: samm50provided by ZNC
Official Full Name: SAMM50 sorting and assembly machinery componentprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-806
See related: Ensembl:ENSDARG00000045814 AllianceGenome:ZFIN:ZDB-GENE-040426-806
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: samm50a; zgc:55803
Summary: Acts upstream of or within liver development. Predicted to be located in mitochondrial outer membrane. Predicted to be part of SAM complex. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in non-alcoholic fatty liver disease. Orthologous to human SAMM50 (SAMM50 sorting and assembly machinery component). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 25

Exon count:: 15

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	25	NC_007136.7 (19008497..19021823)
105	previous assembly	GRCz10 (GCF_000002035.5)	25	NC_007136.6 (18910546..18923872)

Chromosome 25 - NC_007136.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in cristae formation	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within liver development	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in mitochondrial respiratory chain complex assembly	IBA Inferred from Biological aspect of Ancestor more info
involved_in protein insertion into mitochondrial outer membrane	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in mitochondrial outer membrane	IEA Inferred from Electronic Annotation more info
located_in mitochondrion	IEA Inferred from Electronic Annotation more info
located_in outer membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: sorting and assembly machinery component 50 homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200142.2 → NP_956436.2 sorting and assembly machinery component 50 homolog A

Status: VALIDATED

Source sequence(s)

BX897714

UniProtKB/Swiss-Prot

Q803G5

UniProtKB/TrEMBL

B2GSP6

Related

ENSDARP00000095193.3, ENSDART00000104420.4