sdccag8 SHH signaling and ciliogenesis regulator sdccag8 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: sdccag8provided by ZNC
Official Full Name: SHH signaling and ciliogenesis regulator sdccag8provided by ZNC
Primary source: ZFIN:ZDB-GENE-090313-318
See related: Ensembl:ENSDARG00000078947 AllianceGenome:ZFIN:ZDB-GENE-090313-318
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:dkey-60b15.1
Summary: Acts upstream of or within chordate embryonic development. Predicted to be located in several cellular components, including cell junction; cell projection; and centrosome. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome 16 and Senior-Loken syndrome. Orthologous to human SDCCAG8 (SHH signaling and ciliogenesis regulator SDCCAG8). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 13

Exon count:: 18

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	13	NC_007124.7 (11073301..11166594)
105	previous assembly	GRCz10 (GCF_000002035.5)	13	NC_007124.6 (10940833..11034119)

Chromosome 13 - NC_007124.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within cell projection organization	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within centrosome cycle	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within chordate embryonic development	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in anchoring junction	IEA Inferred from Electronic Annotation more info
located_in cell projection	IEA Inferred from Electronic Annotation more info
located_in centrosome	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoskeleton	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: serologically defined colon cancer antigen 8 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001346162.1 → NP_001333091.1 serologically defined colon cancer antigen 8 homolog

Status: VALIDATED

Source sequence(s)

CT573119, CU914440

UniProtKB/TrEMBL

A0A2R8QM06, A0A8M1P5G8

Related

ENSDARP00000153600.1, ENSDART00000182462.1

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007124.7 Reference GRCz11 Primary Assembly

Range

11073301..11166594

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021480592.1 → XP_021336267.1 serologically defined colon cancer antigen 8 homolog isoform X1

UniProtKB/Swiss-Prot

B8JK76

UniProtKB/TrEMBL

A0A8M9PXV8

Conserved Domains (1) summary

pfam15964
Location:14 → 691

CCCAP; Centrosomal colon cancer autoantigen protein family