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    LOC730098 uncharacterized LOC730098 [ Homo sapiens (human) ]

    Gene ID: 730098, updated on 17-Sep-2024

    Summary

    Gene symbol
    LOC730098
    Gene description
    uncharacterized LOC730098
    See related
    Ensembl:ENSG00000187186
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 19.5), brain (RPKM 2.1) and 6 other tissues See more
    Orthologs
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    Genomic context

    See LOC730098 in Genome Data Viewer
    Location:
    9p13.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (34664163..34666045, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (34682692..34684574, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (34664160..34666042, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28314 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19854 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:34654819-34655434 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:34659625-34660126 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19855 Neighboring gene uncharacterized LOC124902146 Neighboring gene interleukin 11 receptor subunit alpha Neighboring gene galactose-1-phosphate uridylyltransferase Neighboring gene C-C motif chemokine ligand 27 Neighboring gene PHD finger protein 24 Neighboring gene C-C motif chemokine ligand 19

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General protein information

    Preferred Names
    uncharacterized protein LOC730098

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001320037.2NP_001306966.1  uncharacterized protein LOC730098

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the shorter transcript. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK296005, AL162231, HY158194
      Consensus CDS
      CCDS83357.1
      UniProtKB/TrEMBL
      D3DRN1, G3V523
      Related
      ENSP00000452132.1, ENST00000544078.2
    2. NM_001320038.2NP_001306967.1  uncharacterized protein LOC730098

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) retains an intron in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK296005, AL162231, BC066358
      Consensus CDS
      CCDS83357.1
      UniProtKB/TrEMBL
      D3DRN1, G3V523
      Related
      ENSP00000457701.1, ENST00000421828.7

    RNA

    1. NR_135148.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) retains an intron compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
      Source sequence(s)
      AK296005, AL162231, BM695963, DB061900, HY030992

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      34664163..34666045 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      34682692..34684574 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)