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    LINC01581 long intergenic non-protein coding RNA 1581 [ Homo sapiens (human) ]

    Gene ID: 101927112, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01581provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1581provided by HGNC
    Primary source
    HGNC:HGNC:51415
    See related
    Ensembl:ENSG00000259724 AllianceGenome:HGNC:51415
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC01581 in Genome Data Viewer
    Location:
    15q26.2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (93905403..94107938, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (91667307..91871002, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (94448632..94651167, complement)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2207 Neighboring gene long intergenic non-protein coding RNA 1579 Neighboring gene long intergenic non-protein coding RNA 1580 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:94461979-94462560 Neighboring gene VISTA enhancer hs1686 Neighboring gene Sharpr-MPRA regulatory region 6915 Neighboring gene polyadenylate-binding protein 4-like Neighboring gene uncharacterized LOC105369203 Neighboring gene uncharacterized LOC105370984 Neighboring gene H3 histone pseudogene 40

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide association studies and heritability estimates of body mass index related phenotypes in bangladeshi adults.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_120320.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC080032, BC043440
      Related
      ENST00000558874.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      93905403..94107938 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      91667307..91871002 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)