U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC02913 long intergenic non-protein coding RNA 2913 [ Homo sapiens (human) ]

    Gene ID: 414318, updated on 19-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    LINC02913provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2913provided by HGNC
    Primary source
    HGNC:HGNC:31370
    See related
    AllianceGenome:HGNC:31370
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C9orf106
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LINC02913 in Genome Data Viewer
    Location:
    9q34.11
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (129321016..129322603)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (141523182..141524769)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (132083295..132084882)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132046985-132047958 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132047959-132048932 Neighboring gene long intergenic non-protein coding RNA 2975 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132049874-132050856 Neighboring gene uncharacterized LOC107987133 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_106889 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29110 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20371 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29111 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:132083677-132084245 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132084246-132084813 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132086855-132087356 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:132096285-132097484 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:132098075-132098878 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:132098879-132099682 Neighboring gene long intergenic non-protein coding RNA 1503 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132114579-132115380 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132115381-132116180 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132120510-132121045 Neighboring gene uncharacterized LOC107987038

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    3. Architecture of the human interactome defines protein communities and disease networks. Huttlin EL, et al. Nature, 2017 May 25. PMID 28514442, Free PMC Article
    4. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_149714.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL161785

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      129321016..129322603
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      141523182..141524769
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8NAJ2.2 GenPept UniProtKB/Swiss-Prot:Q8NAJ2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials