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    LINC00899 long intergenic non-protein coding RNA 899 [ Homo sapiens (human) ]

    Gene ID: 100271722, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC00899provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 899provided by HGNC
    Primary source
    HGNC:HGNC:48583
    See related
    AllianceGenome:HGNC:48583
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in ovary (RPKM 4.0), endometrium (RPKM 2.6) and 25 other tissues See more
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    Genomic context

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    See LINC00899 in Genome Data Viewer
    Location:
    22q13.31
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (46039907..46044868, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (46524503..46529457, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (46435787..46440748, complement)

    Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:46402157-46403148 Neighboring gene dynein heavy chain -like pseudogene Neighboring gene uncharacterized LOC124905134 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13892 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13893 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:46424640-46425193 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr22:46427338-46428112 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:46428113-46428886 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13894 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13895 Neighboring gene uncharacterized LOC124905136 Neighboring gene collagen alpha-1(III) chain-like Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13896 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13897 Neighboring gene PRR34 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19231 Neighboring gene PRR34 long non-coding RNA Neighboring gene long intergenic non-protein coding RNA 2939 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13898

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Long Noncoding RNA LINC00899/miR-944/ESR1 Axis Regulates Cervical Cancer Cell Proliferation, Migration, and Invasion.
      Title: Long Noncoding RNA LINC00899/miR-944/ESR1 Axis Regulates Cervical Cancer Cell Proliferation, Migration, and Invasion.
    2. serum LINC00899 expression level was significantly reduced when the patients achieved complete remission
      Title: Long non-coding RNA LINC00899 as a novel serum biomarker for diagnosis and prognosis prediction of acute myeloid leukemia.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Clone Names

    • DKFZp586K1721

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027036.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI760841, AL137569, AL929387, AW137413, CD674752

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

      Range
      46039907..46044868 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060946.1 Alternate T2T-CHM13v2.0

      Range
      46524503..46529457 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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