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    FAM238C family with sequence similarity 238 member C [ Homo sapiens (human) ]

    Gene ID: 387644, updated on 17-Sep-2024

    Summary

    Official Symbol
    FAM238Cprovided by HGNC
    Official Full Name
    family with sequence similarity 238 member Cprovided by HGNC
    Primary source
    HGNC:HGNC:24672
    See related
    Ensembl:ENSG00000290706 AllianceGenome:HGNC:24672
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C10orf51; bB27G4.1; LINC00202; NCRNA00202; LINC00202-1
    Expression
    Restricted expression toward testis (RPKM 13.6) See more
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    Genomic context

    See FAM238C in Genome Data Viewer
    Location:
    10p12.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (26931206..26942001, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (26961308..26972097, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (27220135..27230930, complement)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC124902398 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:27182897-27183512 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:27183513-27184128 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3177 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_11703 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_11711 Neighboring gene ankyrin repeat domain containing 26 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3178 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_11810 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:27361449-27361982 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_11814 Neighboring gene RNA, U6 small nuclear 490, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3179 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2243 Neighboring gene YME1 like 1 ATPase Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_11825

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Markers

    Other Names

    • family with sequence similarity 236 member C (non-protein coding)
    • family with sequence similarity 238 member C (non-protein coding)
    • long intergenic non-protein coding RNA 202
    • long intergenic non-protein coding RNA 202-1

    Clone Names

    • FLJ40086, FLJ46146

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026795.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL365501, BC038408
      Related
      ENST00000640121.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      26931206..26942001 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      26961308..26972097 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)