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    COX10-DT COX10 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 100874058, updated on 17-Sep-2024

    Summary

    Official Symbol
    COX10-DTprovided by HGNC
    Official Full Name
    COX10 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:38873
    See related
    Ensembl:ENSG00000236088 AllianceGenome:HGNC:38873
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    COX10AS; COX10-AS; COX10-AS1
    Expression
    Ubiquitous expression in lymph node (RPKM 3.7), skin (RPKM 3.5) and 25 other tissues See more
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    Genomic context

    See COX10-DT in Genome Data Viewer
    Location:
    17p12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (14029292..14069458, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (13937098..13977268, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (13932609..13972775, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100506974 Neighboring gene NANOG hESC enhancer GRCh37_chr17:13778177-13778694 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr17:13825822-13826354 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr17:13826355-13826887 Neighboring gene CDRT15 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11742 Neighboring gene cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 Neighboring gene distal CMT1A-REP Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47071 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:14109359-14109859 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:14139403-14139910 Neighboring gene CMT1A duplicated region transcript 15

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Other Names

    • COX10 antisense RNA (non-protein coding)
    • COX10 antisense RNA 1 (non-protein coding)

    Clone Names

    • FLJ41105

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_049718.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK123100
      Related
      ENST00000449363.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      14029292..14069458 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      13937098..13977268 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)