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    SPATA8-AS1 SPATA8 antisense RNA 1 (head to head) [ Homo sapiens (human) ]

    Gene ID: 100652749, updated on 22-Oct-2024

    Summary

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    Official Symbol
    SPATA8-AS1provided by HGNC
    Official Full Name
    SPATA8 antisense RNA 1 (head to head)provided by HGNC
    Primary source
    HGNC:HGNC:48627
    See related
    Ensembl:ENSG00000259282 AllianceGenome:HGNC:48627
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 3.1) See more
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    Genomic context

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    See SPATA8-AS1 in Genome Data Viewer
    Location:
    15q26.2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (96772005..96783337, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (94536639..94547970, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (97315235..97326567, complement)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371002 Neighboring gene NANOG hESC enhancer GRCh37_chr15:97246263-97246873 Neighboring gene family with sequence similarity 149, member B2 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr15:97339270-97340469 Neighboring gene spermatogenesis associated 8 Neighboring gene RN7SK pseudogene 181

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_102753.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AA812851, HY049461, HY244176
      Related
      ENST00000558722.2

    2. NR_102754.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks two 5' exons, contains an alternate 5' exon, and uses an alternate splice site at the 3' exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AA812851, AC027004
      Related
      ENST00000560888.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      96772005..96783337 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      94536639..94547970 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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