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    LOC105378146 uncharacterized LOC105378146 [ Homo sapiens (human) ]

    Gene ID: 105378146, updated on 17-Jun-2024

    Summary

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    Gene symbol
    LOC105378146
    Gene description
    uncharacterized LOC105378146
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 9.9) See more
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    Genomic context

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    See LOC105378146 in Genome Data Viewer
    Location:
    6q27
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (168927741..168964382, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (170276893..170315660, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (169327836..169364477, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986550 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:169156090-169156594 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169183401-169184285 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169184286-169185169 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:169194256-169195455 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:169239888-169240466 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:169240467-169241046 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:169241047-169241624 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:169241587-169241730 Neighboring gene uncharacterized LOC105378144 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169267872-169268474 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169267268-169267871 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169350566-169351070 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:169362660-169363859 Neighboring gene uncharacterized LOC105378145 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:169379249-169379891 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169400447-169400946 Neighboring gene NANOG hESC enhancer GRCh37_chr6:169406890-169407416 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:169418104-169418720 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:169418721-169419336 Neighboring gene uncharacterized LOC101929460 Neighboring gene uncharacterized LOC102724357

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_136248.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL109924

    2. NR_136249.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL109924

    3. NR_136250.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL109924, AL513210

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      168927741..168964382 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NW_004166862.2 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      154861..162052 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007068741.1 RNA Sequence

    2. XR_001756530.3 RNA Sequence

    3. XR_001756529.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      170276893..170315660 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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